Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g577 ATGGAACATGGGGGTTTTGAAGAAGGAGGTGAGATTAGGGTTTATCATTATATTCCCAGATTGATCGCTGGCGCCCTTTCCGGCGCTCTCACCGGTGTTTTTGCTCTCGCTGGTGCTTTCACGGGGGCTATCACTGGTGCTATAGCAGGTAGAGCTTCTGACAGTGGTGTCCTCCGTGGAGCTGGACTTGGTGCCATTGCTGGGGCTGTTTTGTCTGTTGAGGTTTTGGAGGCTTCCCGTGCTTACTGGTGTTCAGACCGATCCAACTCACAGAACTCCTTATCTATTACAGATTTCATAGAGGAGCTTCTCCGTGGGAGAATTGTAGAGGAATCGTTCACACCAGCAGTGTTAACTACTTACCGATGGCAGGTTAGCATTGGTAACTTAAGCTATGATGAGATGTATGATGTCTATGGTGAAGTTGCATCCAGGGGTCTGTCAGGGGACTCACTGAAGAAACTACCATGCCATGTAATCTTGGATGAAATTAAGGCAGCACAGAGCAACTGCTGCACAATATGTTTGCAGGATATTGAAGTTGGGGAAATTGCAAGGAGCTTGCCTTGGTGCCATCACACATTTCACTTGGCATGTGTGGACAAGTGGCTTATAAGACATGGCACGTGCCCTGTGTGCAGGCGCAATGTTTGA 654 48.32 MEHGGFEEGGEIRVYHYIPRLIAGALSGALTGVFALAGAFTGAITGAIAGRASDSGVLRGAGLGAIAGAVLSVEVLEASRAYWCSDRSNSQNSLSITDFIEELLRGRIVEESFTPAVLTTYRWQVSIGNLSYDEMYDVYGEVASRGLSGDSLKKLPCHVILDEIKAAQSNCCTICLQDIEVGEIARSLPWCHHTFHLACVDKWLIRHGTCPVCRRNV* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7045792 7050331 - Vvi17g577 Vvi17g577 779274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g577 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 7 216 IPR044523 -
Vvi17g577 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 7 216 - -
Vvi17g577 217 ProSiteProfiles Zinc finger RING-type profile. 172 214 IPR001841 -
Vvi17g577 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 217 IPR013083 -
Vvi17g577 217 CDD RING-H2_PA-TM-RING 171 214 - -
Vvi17g577 217 SUPERFAMILY RING/U-box 160 217 - -
Vvi17g577 217 Pfam Ring finger domain 171 214 IPR001841 -
Vvi17g577 217 SMART ring_2 172 213 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g577 - - vvi:100245106 408.683