Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g578 | ATGTTGAAGTCCTTCCCACCAAAATCGAGGCGCATCTACGCCAAGCATTCTTCATTCATCTCGAGACCACTCTCTTCTTCTCCATCATCTTCATCTTCAGATTCATCTCCTTCTAGTCTCCCTAACTCTATACTCACCTGCAGAACGGCTAACCAAGCACTCGAGCTCTTCCACTCAGTTTCCCGCCGAGCTGACTTAGCCAAGAATCCGCAGCTCTATTCAGCAATTATCCATGTCTTAACTGGAGCCAAATTGTACGCGAAGGCTAGGTGCTTGATGAGAGACCTCATCCAATGCCTCCAAAATTCTCGGAGATCCCGTATTTGTTGTTCGGTTTTTAATGTTCTTAGTCGGTTGGAAAGCTCTAAATTCACTCCCAATGTGTTTGGGGTGTTGATTATTGCCTTCTCGGAAATGGGTCTTGTGGAAGAAGCCTTGTGGGTGTATTACAAGATGGATGTATTGCCGGCAATGCAGGCTTGTAACATGGTCTTAGATGGGTTGGTTAAGAAGGGTAGGTTTGATACGATGTGGAAAGTTTATGGTGATATGGTAGCGCGCGGAGCGTCGCCTAATGTGGTCACCTATGGGACATTGATTGATGGGTGTTGTAGACAAGGTGACTTTTTGAAAGCATTCAGGTTGTTTGATGAAATGATTGAGAAGAAAATTTTCCCAACGGTTGTGATATACACAATTCTCATACGTGGGCTGTGCGGTGAGAGTAGAATTTCAGAAGCAGAAAGTATGTTTAGGACAATGAGGAATTCGGGTATGCTCCCAAATTTGTATACATACAACACAATGATGGATGGATACTGTAAGATAGCCCATGTGAAGAAAGCCCTTGAATTGTACCAGGAAATGCTAGGTGATGGTCTGCTGCCAAACGTTGTGACTTTTGGTATTTTAATTGATGGACTTTGCAAAACAGATGAAATGGTGTCTGCCAGAAAGTTTTTGATTGATATGGCTAGTTTTGGTGTTGTTCCAAATATATTTGTGTATAATTGTTTGATAGACGGCTACTGTAAGGCAGGGAACCTCTCTGAAGCACTGAGTTTGCATTCAGAGATTGAAAAGCACGAAATTTTGCCTGATGTCTTCACTTACAGTATACTAATAAAGGGCCTTTGTGGTGTCGATAGAATGGAAGAAGCAGATGGGTTGTTGCAAGAAATGAAGAAAAAGGGATTCCTTCCGAATGCTGTGACCTACAATACACTCATTGATGGGTACTGCAAAGAAGGCAACATGGAGAAGGCAATAGAGGTGTGTTCTCAAATGACAGAAAAGGGTATAGAGCCTAACATCATTACCTTCTCTACATTGATTGATGGTTATTGCAAGGCAGGGAAAATGGAGGCTGCCATGGGATTGTACACTGAAATGGTAATCAAAGGTCTTCTACCTGATGTAGTTGCTTATACAGCTTTAATTGATGGGCATTTCAAAGATGGCAACACAAAAGAAGCTTTCCGGCTTCATAAGGAGATGCAGGAGGCAGGCCTTCATCCTAATGTTTTCACACTTAGTTGCTTAATTGATGGATTATGCAAGGATGGAAGGATTAGTGATGCAATCAAACTTTTCTTAGCGAAAACTGGAACTGATACCACTGGTAGTAAAACTAATGAGTTGGATAGAAGCTTGTACCAGATGTGTTCACTTGCATTGTCATTATTCAGGGGCATTTCCGAGCCATGCATTTGCGTGATAAGGGTGACCAAGTTATTTGCAACTAACAATCAGCCCAAAGCCCATCTCCATACTCACCTCAAACCACCAAAATCAAACCAAACTCTGAAAAGGTACCTTCAATCCAGTAACACTAGCAAGGTTCTCCTTTTCTTTCGCATCTTATTGAGAAAAAACCCTTCTTCAATTGACAGCTTCTCCCTCATGTTTGCCCTTAAAGCTTGCACCCTAAAGTCTTCCTTGGTAGAAGGAAAACAAATGCATGCGCTTGTCATAAACTTTGGCTTTGAACCCATCATTTTCCTCCAAACATCTCTCATAAGCATGTATTCAGCAACGGGAAATGTTGCTGATGCACATAATATGTTTGACGAAATACCTTCCAAAAATCTCATCTCTTGGACTTCCGTGATTTCTGCTTATGTTGACAATCAGAGGCCCAATAAAGCTCTTCAGCTCTTCAGGCAGATGCAGATGGATGATGTGCAACCTGATATAGTCACAGTAACTGTAGCTCTCTCCGCCTGTGCTGACCTTGGGGCGTTAGACATGGGAGAATGGATTCATGCTTACATCCGCCATAGAGGACTCGATACAGATTTATGCCTAAACAATTCTCTCATAAACATGTATTCAAAATGTGGGGAGATCGGTACTGCCAGGAGATTCTCTTTAGTCCTCCCTAATGATGTTACTTTCATGGGAGTTTTAATGGCCTGCAGCCATGCAGGTCTTGTGGAAGAAGGGAAGCAGCATTTCAGAAGCATGAAAGAGGATTATAGCTTGAGGCCAAGAATTTCCCACTTTGGCTGCATGGTGGATCTTTTATGCCGTGCTGGTCTCCTAACAGAAGCTTATGAGTTTATATTGAAGATGCCGGTGCGGCCAAACGCAGTGGTGTGGCGTACATTGCTAGGTGCATGCAGCCTCCAAGGCATGTGGGATAAGAAGATGTTAGTCAGAAACCAAATAAAGCAGAGGAGAGATCCAGGTTGCAGTTCAATTGAAGTGGGAATTGACATTAAAGAGTTTGTTGCTGCAGATGATCAACATCCATGTATGCCTCAGATATATGAGATTCTTGACCACCTGACTAGAACCATGAGAGCTTCTGACTGTGCTCTGGGGACAGACACCCCCATGGAGTGA | 2847 | 42.89 | MLKSFPPKSRRIYAKHSSFISRPLSSSPSSSSSDSSPSSLPNSILTCRTANQALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLYQMCSLALSLFRGISEPCICVIRVTKLFATNNQPKAHLHTHLKPPKSNQTLKRYLQSSNTSKVLLFFRILLRKNPSSIDSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRFSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKMPVRPNAVVWRTLLGACSLQGMWDKKMLVRNQIKQRRDPGCSSIEVGIDIKEFVAADDQHPCMPQIYEILDHLTRTMRASDCALGTDTPME* | 949 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 7050695 | 7055235 | - | Vvi17g578 | Vvi17g578 | 779275 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 192 | 226 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat | 834 | 859 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat | 797 | 825 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat | 129 | 152 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat | 161 | 188 | IPR002885 | - | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 332 | 366 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat family | 331 | 379 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat family | 401 | 450 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat family | 261 | 310 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat family | 191 | 239 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat family | 695 | 743 | IPR002885 | - | |
| Vvi17g578 | 948 | Pfam | PPR repeat family | 471 | 520 | IPR002885 | - | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 297 | 331 | IPR002885 | - | |
| Vvi17g578 | 948 | SUPERFAMILY | HCP-like | 204 | 505 | - | - | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 367 | 401 | IPR002885 | - | |
| Vvi17g578 | 948 | PANTHER | OSJNBA0060P14.6 PROTEIN | 2 | 538 | - | - | |
| Vvi17g578 | 948 | PANTHER | OSJNBA0060P14.6 PROTEIN | 638 | 825 | - | - | |
| Vvi17g578 | 948 | PANTHER | OSJNBA0060P14.6 PROTEIN | 792 | 891 | - | - | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 696 | 730 | IPR002885 | - | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 157 | 191 | IPR002885 | - | |
| Vvi17g578 | 948 | Gene3D | Tetratricopeptide repeat domain | 42 | 209 | IPR011990 | GO:0005515 | |
| Vvi17g578 | 948 | Gene3D | Tetratricopeptide repeat domain | 791 | 916 | IPR011990 | GO:0005515 | |
| Vvi17g578 | 948 | Gene3D | Tetratricopeptide repeat domain | 597 | 790 | IPR011990 | GO:0005515 | |
| Vvi17g578 | 948 | Gene3D | Tetratricopeptide repeat domain | 210 | 324 | IPR011990 | GO:0005515 | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 227 | 261 | IPR002885 | - | |
| Vvi17g578 | 948 | Gene3D | Tetratricopeptide repeat domain | 397 | 465 | IPR011990 | GO:0005515 | |
| Vvi17g578 | 948 | Gene3D | Tetratricopeptide repeat domain | 466 | 535 | IPR011990 | GO:0005515 | |
| Vvi17g578 | 948 | Gene3D | Tetratricopeptide repeat domain | 325 | 396 | IPR011990 | GO:0005515 | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 472 | 506 | IPR002885 | - | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 402 | 436 | IPR002885 | - | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 437 | 471 | IPR002885 | - | |
| Vvi17g578 | 948 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 792 | 891 | - | - | |
| Vvi17g578 | 948 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 638 | 825 | - | - | |
| Vvi17g578 | 948 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 2 | 538 | - | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 299 | 333 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 439 | 473 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 369 | 403 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 160 | 193 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 474 | 508 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 510 | 531 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 264 | 298 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 698 | 732 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 404 | 438 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 335 | 368 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 229 | 262 | IPR002885 | - | |
| Vvi17g578 | 948 | TIGRFAM | PPR: pentatricopeptide repeat domain | 194 | 227 | IPR002885 | - | |
| Vvi17g578 | 948 | MobiDBLite | consensus disorder prediction | 20 | 40 | - | - | |
| Vvi17g578 | 948 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 262 | 296 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g578 | - | - | - | vvi:100853899 | 1066.22 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g578 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone13ag0061 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007789 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 4 | 2 | 1 | 36 |