Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g580 ATGATCCGAGGGCATTCTCAGAGCGAAACGCCCCATAAGTTGGTTGAGCTTTACAATCGAATGGTAGAGGCTGAGGCTGAGCCCAATGAGTTCACGTATTCGTTTCTTATTGGTGGTTGTGCGCGGTCGAGGTTGTTGAGAGAGGGCGAGCAGGTGCATGGAAGAGTTGTGGCAAACGGGTATTGCACTAATGTGTTTGTTCGGACGAGTTTGGTTAATTTGTATGCGATCGCTGGGGGATATGATGGGGTAAGGAAGGCACGCCGGGTGTTTGATGAAATAGTTGATAGAAATATAGTGAGTTGGAATTCGTTGCTTGCAGGGTATGTTAGGTGTGGGGATGTTGATGGGGCACGGAGGATTTTTGATGAGATGCCGGAAAGGAATGTTGTCTCGTGGACAACCATGATTGCAGGATGTGCGCAAATTGGGAGGTGTAAGCAAGCGTTACATTTGTTTCATGAGATGAGAAGGGCCGGTGTAAAATTAGACCAGGTGGCATTGGTGGCAGCTTTGTCAGCCTGTGCTGAATTGGGGGACTTGAAGTTGGGGACATGGATCCACTCTTACATTGATGAGAGACTGCATGCTGGAAATCAGCCATTGCTTGTGTCTTTGAACAATTCGCTCATACACATGTATGCCAGCTGTGGTGTAATTGATAAAGCTTATAAAGTATTCATAGGGATGCAACAGAGAAGCACTATTTCTTGGACAAGCATGATCACAGGTTTTGCAAAACAAGGCCATGCAGAAGAAGCTCTTGGTGTGTTTCAGTGGATGCAGAGGTTGGGAACGGATGAAGGGAGACCCGATGGGATAACCTTCATTGGAGTTCTGTGTGCCTGCAGCCATGCTGGATTTGTCGACCAAGGCCGTCATTTTTTTGAATGCATGAATAAAAAATGGGGCATTGTACCAAGGATTGAGCACTATGGATGCATGGTTGATCTCCTGAGCCGTGCTGGCTTCTTGGATGAAGCACATAGACTCATTGAGTCTATGCCTATGAAGCCAAATGATGCTGTATGGGGTGCTCTTCTTGGTGGATGCAGGATTCACAAGAATGCCGAGCTTGCTTCCCATGTTGCTCAAAAATTGGCACTTGAGCTTAAACCTGATCAAGCTGCAGGCTATCTTGTGCTACTGTCAAATGTTTATGCTACTGCTAAAAGGTGGCAGGACGTTGCTTTAGTGAGACAGAAGATGGTTGAGATAGGTGTAAGAAAGCCTGCAGGCCGAAGTTGGGTCCAAATAAATGGAGTTGTCCATGACTTTGTGGCAGGTGACTGGACTCACAAGCATGCATCTTCAGTATATGAGATGCTTAGCAAGATTACAAGGCAAGCCAAATTGGAAGGCTACAAACTGGACATTTCAGAGGTGCTTTTGGACGTTGAATAG 1404 46.37 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDISEVLLDVE* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7058123 7059527 + Vvi17g580 Vvi17g580 779277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g580 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 163 IPR002885 -
Vvi17g580 467 Pfam PPR repeat 311 336 IPR002885 -
Vvi17g580 467 Pfam PPR repeat 208 233 IPR002885 -
Vvi17g580 467 TIGRFAM PPR: pentatricopeptide repeat domain 131 164 IPR002885 -
Vvi17g580 467 TIGRFAM PPR: pentatricopeptide repeat domain 100 131 IPR002885 -
Vvi17g580 467 TIGRFAM PPR: pentatricopeptide repeat domain 236 265 IPR002885 -
Vvi17g580 467 Pfam PPR repeat family 1 42 IPR002885 -
Vvi17g580 467 Pfam PPR repeat family 234 283 IPR002885 -
Vvi17g580 467 Pfam PPR repeat family 128 174 IPR002885 -
Vvi17g580 467 Gene3D Tetratricopeptide repeat domain 82 192 IPR011990 GO:0005515
Vvi17g580 467 PANTHER OS09G0411600 PROTEIN 1 445 - -
Vvi17g580 467 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 445 - -
Vvi17g580 467 Pfam PPR repeat 97 125 IPR002885 -
Vvi17g580 467 Pfam E motif 354 418 IPR046848 -
Vvi17g580 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Vvi17g580 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Vvi17g580 467 Gene3D Tetratricopeptide repeat domain 268 444 IPR011990 GO:0005515
Vvi17g580 467 Gene3D Tetratricopeptide repeat domain 1 81 IPR011990 GO:0005515
Vvi17g580 467 Gene3D Tetratricopeptide repeat domain 193 267 IPR011990 GO:0005515
Vvi17g580 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g580 - - - vvi:100260292 951.814
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1577 Vvi17g580 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g580 Blo04g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00087 . Chy12g01527 . . . . . . Bpe15g00596 . . . . . . . . . . . Bhi08g01140 . . . Hepe07g2495 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014193 0 1 1 0 1 0 1 1 1 1 0 1 1 0 1 1 1 2 0 0 1 1 1 1 1 0 1 1 1 1 23