Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g586 ATGCCTTGCTACGGCCTTCAACCATTGCATGATGGGTCCTGCCATTACTTCCTTCACATGCCTGCCAAAAGTGATGCTAGTGGCAATGGCAATACTAATAAAAGGATATGTGCCTTTGTCAATAGGAGCAAACTGAAGATTTTGCTATGTGATGCAAATGTTAATAATTGTAGAGAAGTTGCCACACTTCTGCGAGGATGCTCTTATCAGATGACTTCAGTTGGCTCAACTCGAGAGGTAATCTATGTCCTGAACTGTGAGGGGGCCAGTATCGATATTGTACTTGCTGAAGCTGATCTTCCTATGGCCAACAGCATGAAGATTTTAAAGTACATTACTCAAGATCAAGAGCTGCGATGCATTCCAGTGATGAGTATGTTTGTCCTAACGTTTATCCTCCCTTTCTCCATAGCTAGTTAA 420 42.38 MPCYGLQPLHDGSCHYFLHMPAKSDASGNGNTNKRICAFVNRSKLKILLCDANVNNCREVATLLRGCSYQMTSVGSTREVIYVLNCEGASIDIVLAEADLPMANSMKILKYITQDQELRCIPVMSMFVLTFILPFSIAS* 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7096185 7098427 + Vvi17g586 Vvi17g586 779283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g586 139 ProSiteProfiles Response regulatory domain profile. 46 139 IPR001789 GO:0000160
Vvi17g586 139 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 29 126 - -
Vvi17g586 139 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 126 IPR045279 GO:0009736
Vvi17g586 139 Gene3D - 35 130 - -
Vvi17g586 139 SUPERFAMILY CheY-like 43 127 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g586 K12127 TOC1, APRR1; pseudo-response regulator 1 - vri:117904862 147.132
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g586 . . . . . . . . . . . . . Car11g00166 . . Cpe04g01485 . . . . . . . . . . . . . . . . . . Lsi02g00088 . Chy12g01526 Cme12g01975 . . . . . . . . Sed08g2087 . Cmo11g00182 . . . . . . Bhi08g01139 Tan05g2421 Cmetu12g2014 Lac10g0096 Hepe07g2494 . . Cla04g01184 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023868 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 3