Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g587 ATGGCGCGGAATGAGATTGGCAGCGGCGGAAGTAACAGTAAGAGCAGTGATTCCTTTATCGATCGAAGCAACGTGCGGATTTTGTTGTGCGACAACGATACCAAGAGTTCGGACGAGATCTTCACTCTTCTCTGCGGGTGCTCCTATCAAGTAACATCAGTGAGGTCAGCTAGACAGGTGATTGATGCATTGAATGCTGAGGGACATGATATTGATATCATACTCGCTGAAGTTGACCTTCCAATGACCAAAGGCATGAAGATGTTAAAGTACATTATGCGGGATAAGGAGTTGCGACGCATACCCATTATCATGATGTCTGCACAGGACGAGGTTTCTGTTGTTGTGAAGTGCTTGAGACTTGGTGCAGCTGACTACCTTGTAAAGCCTTTGCGCACAAATGAACTATTGAACTTGTGGACTCACATGTGGAGAAGGCGGCGAATGCTTGGACTTGCAGAGAAGAACATCTTGAATTATGATTTTGATGTGGCAGCTTCAGACCCTAGTGATGCTAATACAAACAGTACTATGTTCTCGGATGACACGGATGACAAGTCACGGATGAGTGCCAATCCAGAGATGGTTGTTTCAGTTCATCAGGAAGATGAGTCTAATGCTACTATTGATAGCACTGATGTTGCTGCTGAGCCTCCAGTTGTGAATCAGTTGGAATGTCGGCCTGATGTTCCAGGAATTAGTGACAGGCGAACAGGACAACTTCTTTCAGGCCCAAAAAAGAGTGAACTGAAGGTTGGTGAGTCTTCTGCCTTCTTTACATATGTCAAATCAAGCATGATTAAAACCAATTCTCAAGGGATTCCCAACATCAATGAAAGTGCTCCTCAACATTCAAGGATGGAAGAGAGAGTTCAAGCATGGAGTGAAAAGGGGGTTAATGATACCCAAGAACATGAAAATGGAGAGGCATGGGAAAACTATTCACAAGGAGATGACTTTCCAAGCAAAGAGTTCTCTCAGGTGCCAATTCATCCAAGAAATGAACATCAAGTTGATATTTCAGGGTTTCCGGGGCACACTGCTTACCCATATTGTATGTCAGGAGTGATGAATCAAGTGATGATGCCATCATCTGCACAGCTGTATCCGAAGAGCCTGCATGACATGCAAAATAATGCTACTACTTCTGCCATGCTACCTCAGTACAATCATCTTCCACAATGTCCTCCCCATGTGCCTGGAGTTGCATCATTTCCTTATTATCCAGTTAGTATATGCCTGCAACCAGGTCAAATGTCCACTACACACCCCTGGCCATCATATGGAAATTCATCTTCCACTGAAGTGAAATTAGGTAAAGTAGATAGAAGAGAGGCTGCCTTGATAAAGTTTAGGCAGAAAAGGAAGGAGCGTTGTTTTGACAAGAAAATTAGATATGTGAACAGAAAACGACTTGCTGAAAGGAGGCCACGTGTGAGAGGACAGTTTGTGAGGAAAATGAATGGTGTAAATGTGGATCTTAATGGGCGACCTGCTTCTGTTGATTTTGATGAGGATGAAGAGGAAAAGGCTGATGGATTCTCTAAAATACTCTTGAAGGAGAGAAGGAGTATGTGTGGAGAAGGTGATTGGAAATTTTAG 1602 43.57 MARNEIGSGGSNSKSSDSFIDRSNVRILLCDNDTKSSDEIFTLLCGCSYQVTSVRSARQVIDALNAEGHDIDIILAEVDLPMTKGMKMLKYIMRDKELRRIPIIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYDFDVAASDPSDANTNSTMFSDDTDDKSRMSANPEMVVSVHQEDESNATIDSTDVAAEPPVVNQLECRPDVPGISDRRTGQLLSGPKKSELKVGESSAFFTYVKSSMIKTNSQGIPNINESAPQHSRMEERVQAWSEKGVNDTQEHENGEAWENYSQGDDFPSKEFSQVPIHPRNEHQVDISGFPGHTAYPYCMSGVMNQVMMPSSAQLYPKSLHDMQNNATTSAMLPQYNHLPQCPPHVPGVASFPYYPVSICLQPGQMSTTHPWPSYGNSSSTEVKLGKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKMNGVNVDLNGRPASVDFDEDEEEKADGFSKILLKERRSMCGEGDWKF* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7101162 7108526 + Vvi17g587 Vvi17g587 779284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g587 533 SUPERFAMILY CheY-like 20 150 IPR011006 -
Vvi17g587 533 Pfam Response regulator receiver domain 27 138 IPR001789 GO:0000160
Vvi17g587 533 Pfam CCT motif 444 486 IPR010402 GO:0005515
Vvi17g587 533 ProSiteProfiles CCT domain profile. 444 486 IPR010402 GO:0005515
Vvi17g587 533 SMART REC_2 25 140 IPR001789 GO:0000160
Vvi17g587 533 ProSiteProfiles Response regulatory domain profile. 26 144 IPR001789 GO:0000160
Vvi17g587 533 Gene3D - 25 225 - -
Vvi17g587 533 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 498 IPR045279 GO:0009736
Vvi17g587 533 MobiDBLite consensus disorder prediction 227 246 - -
Vvi17g587 533 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 7 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g587 K12127 TOC1, APRR1; pseudo-response regulator 1 - vvi:100258790 1000.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g587 . . . . . . . Bma12g00984 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14218 PF00072 Response_reg 3.30E-17 CL0304 Vvi TR