Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g588 ATGGCACTAGATTACCGGAGAAAGAGGGAGAAAATGCGGAACCCTAGAGGGTGTTTCTTTTACCCAGATCGTTCGATTCACAACCTTCCCAACACGACATTTCTCCGGCGGACCTCCGGCGGTTTCCACCCTTGTTCCGATCATATTCCGGTTGGTGAGAGATTCAGATCCAATATGAGCCAGGTATTCGAAGGATACGAGCGTCAGTATTGCGAGCTTTCCGCGAATTTATCGCGGAAATGTACTGCTGCCAGTCTTCTTAATGGGGAGCAGAAGAAGCAGAAGGTTTCTGAAATAAAAGCTGGATTGGATGATGCTGATGCTTTGATCCGGAAAATGGATCTTGAGGCAAGGAGTTTGCAGCCAAGTGTAAAGGCTATGCTTCTTGCTAAGTTAAGAGAATATAAAACTGATCTAAACAATGTGAAAAATGAGGTTAAAAGAATCACATCAGCTAATACCAATCAGGCTGCCCGAGATAATTTGCTGGAGTCAGGAATGGCAGATACAATGACAGTTTCTGCTGATCAGAAAACAAGGTTATTGATGTCGACAGGTAGATTGAATCAGTCCGGTGACCGAATTAAGGAGAGTAGAAGAACAATGCTTGAAACAGAAGAACTTGGTGTTTCAATCCTTCAAGATTTGCACCAACAACGCCAGTCTCTCCTACATGCCCATAACACACTCCACGGAGTGGATGACAATATTAGCAAAAGCAAGAAGATCCTGACGGCTATGTCAAGAAGGATGAGCAGGAACAAATGGATCATCGGCTCCGTAATTGCTGCCCTAGTCCTTGCAATCATTTTGATCCTTTATTTCAAGCTGGCTCATTAG 840 44.17 MALDYRRKREKMRNPRGCFFYPDRSIHNLPNTTFLRRTSGGFHPCSDHIPVGERFRSNMSQVFEGYERQYCELSANLSRKCTAASLLNGEQKKQKVSEIKAGLDDADALIRKMDLEARSLQPSVKAMLLAKLREYKTDLNNVKNEVKRITSANTNQAARDNLLESGMADTMTVSADQKTRLLMSTGRLNQSGDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRNKWIIGSVIAALVLAIILILYFKLAH* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7109390 7124378 - Vvi17g588 Vvi17g588 779285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g588 279 Gene3D - 175 255 - -
Vvi17g588 279 Coils Coil 125 152 - -
Vvi17g588 279 Pfam Vesicle transport v-SNARE protein N-terminus 70 148 IPR007705 GO:0006886|GO:0016020
Vvi17g588 279 Gene3D - 57 158 IPR038407 -
Vvi17g588 279 Pfam Snare region anchored in the vesicle membrane C-terminus 187 251 - -
Vvi17g588 279 SUPERFAMILY t-snare proteins 64 151 IPR010989 GO:0016020|GO:0016192
Vvi17g588 279 SUPERFAMILY SNARE fusion complex 188 247 - -
Vvi17g588 279 CDD SNARE_Vti1 185 245 - -
Vvi17g588 279 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 59 278 - -
Vvi17g588 279 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 59 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g588 K08493 VTI1; vesicle transport through interaction with t-SNAREs 1 - vvi:100248505 407.912
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1582 Vvi17g588 ECH
Vvi14g1050 Vvi17g588 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g588 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000886 2 4 5 2 3 2 4 1 1 2 2 2 2 3 4 3 2 4 4 2 3 2 3 3 3 3 3 7 4 3 88