Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g591 ATGTCTGCTGGTGCTTCCTCTTCTGGTTTGCCTTCCGACGATTTCAACGATGTCGAGGACTTCAATTGGGTCAATGAAGGCGAGGGACTATCGAAGCGGGACCGATATCCTGAGTTGTTGGATCTCGTAAAGAAGGGCAATCGTGCGTTCCGAGAAAATCGAATGGAGGAGGCGATCAATTGTTACACAAAAGCCAGTAACATCCAGCCAAATGATGCTGTTATCCTCAGCAACCGATGTGCTGCTTATATCAGGATTAGCGACTTTCTTAAACAAAGAACTCCGACAGATTCTGAATATAGACCATTGAATGGGCTGGATCCTACCATACACGCTGAACTTGCTTTAAAGGATGCCACAAGGTTGGTGGACTTACGAAGTAATTCAGTAAAACCATACATCTTCAAGGCTAATGCTCTCATTTTGTTGGAAAAATATGATCTGGCTCGAGAAGCTATTCTTTCAGGCCTTCAGGTTGACCCTCTAAGCAATGCTCTTCAGGTTTCCCTTCAGAAGTTGGAGAAAGCAACAGCCAGTCTAAACCACAGAGGCCGTGGGAAGCCAGAACGTAGTGATGACTTTGATTGTACACTTTGCCTTAAGTTATTATTTGAACCTGTAACAACTGCTTGTGGCCATTCTTTTTGTCGCTCTTGCCTATTTCAGGCAATGGACTGTAGTAATAAATGTCCACTATGCCGAATGGTTCTTTTTATCAATCCTAAAACATGTTCAATCAGTGTTACATTGAACAATATAATACAGAGGAACTTTCCAGAGGAATATGCTGAAAGGAAGTCAGAGCATGAAAGTTTAACAAACTTCGGCTTTGATCTGCTGCCTCTTTTTGTCATGGATGTTGTTCTCCCATGTCAGAAGGTTCTCTTAAACATATTTGAACCCCGCTACAGACTTATGGTTAGGAGGATAATGGAAGGAAATCACCGGATGGGAATGGTTATCATTGATTCTACAACAGGTGTCCCAGCTGAGTTTGGTTGTGAAGTGGAGATTACTGAATGTGATCCACTTCCAGACGGACGTTTCTATCTAGAGGTTGAAGGTAGGCGAAGATTTCGCATAATCAATTGTTGGGATCAAGATGGGTATCGAGTTGCTGCAGTTGAATGGGTTCAGGATATTCTTCCACCTGATAGGACAAAAGAACAAGTAGATTTACAGGAAATGTCAAGTAATGCAGCTAAGTATGCTCGGTTGTGGATAAAGAGGGCAAAAGAAGCAGCATGGCAAGATAGAAGACGACTTGCTGAACTCTGTCATGCTGAAGCGATGATGCCCACACCACAGGATCCTGAGCTCTTCAGTTTTTGGCTTGCTGGTCTATCAAACCGGAGGCCACCAGAAAGATTGGATCTCCTGTATATACGAGACACAAAAGAGAGGATAAGGCGTGGACTCATTTATATGAGAGATGCAGAACAGGGCTGTCAAGTGCAATGA 1461 43.33 MSAGASSSGLPSDDFNDVEDFNWVNEGEGLSKRDRYPELLDLVKKGNRAFRENRMEEAINCYTKASNIQPNDAVILSNRCAAYIRISDFLKQRTPTDSEYRPLNGLDPTIHAELALKDATRLVDLRSNSVKPYIFKANALILLEKYDLAREAILSGLQVDPLSNALQVSLQKLEKATASLNHRGRGKPERSDDFDCTLCLKLLFEPVTTACGHSFCRSCLFQAMDCSNKCPLCRMVLFINPKTCSISVTLNNIIQRNFPEEYAERKSEHESLTNFGFDLLPLFVMDVVLPCQKVLLNIFEPRYRLMVRRIMEGNHRMGMVIIDSTTGVPAEFGCEVEITECDPLPDGRFYLEVEGRRRFRIINCWDQDGYRVAAVEWVQDILPPDRTKEQVDLQEMSSNAAKYARLWIKRAKEAAWQDRRRLAELCHAEAMMPTPQDPELFSFWLAGLSNRRPPERLDLLYIRDTKERIRRGLIYMRDAEQGCQVQ* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7139022 7151201 + Vvi17g591 Vvi17g591 779288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g591 486 SUPERFAMILY PUA domain-like 280 476 IPR015947 -
Vvi17g591 486 PANTHER RING FINGER PROTEIN 127 5 478 - -
Vvi17g591 486 SUPERFAMILY RING/U-box 189 258 - -
Vvi17g591 486 Gene3D - 279 380 IPR046336 -
Vvi17g591 486 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Vvi17g591 486 Gene3D Tetratricopeptide repeat domain 33 187 IPR011990 GO:0005515
Vvi17g591 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 280 477 IPR003111 -
Vvi17g591 486 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 5 478 - -
Vvi17g591 486 SMART tpr_5 39 72 IPR019734 GO:0005515
Vvi17g591 486 SMART tpr_5 130 163 IPR019734 GO:0005515
Vvi17g591 486 SMART lon_5 279 478 IPR003111 -
Vvi17g591 486 ProSiteProfiles Zinc finger RING-type profile. 196 234 IPR001841 -
Vvi17g591 486 ProSiteProfiles Lon N-terminal domain profile. 277 478 IPR003111 -
Vvi17g591 486 SUPERFAMILY TPR-like 42 182 IPR011990 GO:0005515
Vvi17g591 486 Gene3D - 418 478 - -
Vvi17g591 486 SMART ring_2 196 233 IPR001841 -
Vvi17g591 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 275 IPR013083 -
Vvi17g591 486 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Vvi17g591 486 Pfam Zinc finger, C3HC4 type (RING finger) 196 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g591 - - - vvi:100258753 991.104
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35