Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g592 ATGGCGCTGTTCAGACGGTTCTTTTATCGGAAGCCACCGGATCGGCTTCTCGAGATCTCCGAGCGAGTCTACGTATTTGATTGTTGTTTCTCCACTGACGTATTGGAAGAAGATGAATACAAAGTTTACATGGGTGGCATTGTAGCACAACTACAAGACTACTTTACTGATGCTTCTTTCATGGTGTTTAACTTTAGAGAAGGGGATAGGCGAAGCCAAATCTCAGACATATTGTCTCAGTATGACATGACAGTTATGGACTACCCTCGGCAATATGAGGGGTGTCCTCTTCTACCATTGGAGATGATCCACCATTTCTTGCGATCAAGTGAGAGTTGGTTGTCACTGGAGGGGCAACAGAATGTCTTGTTAATGCACTGTGAAAGAGGAGGATGGCCGGTGCTTGCTTTCATGCTTGCAGGTCTTTTATTATACCGAAAACAGTATAATGGGGAACAGAGAACTCTTGAAATGGTCTACAAGCAAGCTCCAAGGGAACTGCTCCATCTGTTGTCCCCTTTGAATCCACAGCCTTCCCAGTTGAGATATCTTCAGTATATTTCCAGAAGAAACTTTGGTTCAGATTGGCCTCCATCGGATACACCTCTAAAGTTGGATTATCTTATTCTTAGAATCCTTCCTCTGTTTAATGGGGGAAGGGGTTGCAGGCCGGTGGTTCGTGTTTATGGTCAGGATGCTTCAGCAATGGCAAACAGAAGTTCTAAGCTTCTGTTTTCAACTTCAAAGACAAAAAAACATGTTCGTCACTACCAACAGGCAGAGTGTACAGTAGTGAAAATAGGTATTCATTGCCGTGTTCAAGGGGATGTTGTTCTTGAATGTATCCATTTGGATGAAGATCTAGTACGTGAGGAAATGATGTTCAGAGTTATGTTCCACACAGCATTTGTCCGTTCAAATATTTTGATACTCAACCGTGATGAGATTGATGTCTTGTGGGATGTGAAGGACCAGTTCCCGAAAGACTTCAAAGCAGAGGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTTTTGAGGTTGAGGAGATCTTCAGCAATGCTGCAGATGCACAGGAGGTGAAGGGGGACTATGATATTCATGCCGTTCAAGACATTATGATGGACGATGGAAATCATAAAGAAGAGGTAACTGCAGATGTGTGCCTGGATGATGGTGATAAAATATTAGATTCCCCGGTAGTAGTTGCTGATGAGCTCAAAAACATAGGAACCAAGGTACAGATTGACAATAGGGTGCCGCAGCAAAAGTTGAATGCTGATTCTGGTAGGCAAAAGTCTGATAAATTACTGCCACCTGCACCCAGGAAACAGCCTGCTTCAACTGCAAAACCACCAGCTGCAGAGTCAGTCATAGCCAAGCAAAAAGTTAAACAGCAAGAACCTCAGAGTGCTGCTGCAAAACCTACAAAGCAAAAACCATTGGTATCTCGATGGATTCCTCCTAATAAAGGCTCCTACACTAATTCCATGCATATTTCATATCCACCATCAAGGTATAATAGTGCACCAGCTGCTCTAGTCATCACTGCTCTTTCAAAGGATTCTAATGCTGATGGCAATCTAGAGATACACTTGCTTCCTCATTTGGATTGCCACATCCTGGCCCAGAGCAAAGGCCCACCTCCACCACCTCCTCCTGGAGGTCGTGCACCTGGTCCTCCTGCACCACCTCGGCCTCCAGGTGGTGGACCTCCTCCACCTCCACCCTTTGCACCTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATTGCGCCAGAATTTGATGTCTCAGAGTTGGAGACTCTTTTCTCCGCCACAGTCCCAAATTCGGCTAATAGCTTAGGAGGTAAATCCGGTGGGAGGCGCAAGTCTGTTGGATCTAAAGCTGACAGAGTCAACCTGATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGGCTGCAGTTCTAGCAATGGATGAGTCAATTTTAGATGTTGATCAAGTGGAAAATCTCATAAAGTTCTGCCCTACTAAAGAGGAGATGGAACTTCTTAAGGCCTATACTGGTGATAAGGAGGCCCTGGGAAAGTGTGAACAGTTCTTTCTGGAGCTGATGAAAGTGCCCCGTGTGGAGTCTAAATTAAGAGTATTTTCCTTCAAGATTCAATTTGGATCTCAGATTTCAGATTTTAGAAAAAGTTTGAACACTGTAAACTCTGCATGTGAAGAGGTTCGCAATTCGGTGAAATTGAAGGAAATCATGAAGAAAATTCTTTACCTCGGGAATACATTGAACCAAGGAACTGCAAGGGGTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAGGTGCTTGCCTCTAAGTCACCAGGACTTCTAGATTTCCATGAGGATCTTGTTAGCCTGGAGGCTGCATCAAAGATACAATTGAAATCTTTAGCAGAAGAAATGCAGGCTATAATGAAGGGGTTGGAAAAGGTCAAGCAGGAGCTGAATGCATCTGAAAATGATGGTCCTGTATCGGATATTTTTCGTAAGACATTGAAAGAGTTCATTGGTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGGGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGTCCGCTGCCCATTTGAACAAGTCACTGTAACCCTCTTAAACTTTATAAGACTGTTCCGGAAAGCGCATGAAGAGAACTGCAAGCAAGCTGAATTAGAGAGGAAGAAGGCTCAGAAAGAGGTTGAAATGGAGAAGGCAAAGGGAATTAACCTAACAAAGAAGGGTGTAAAGTAG 3033 44.02 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYMGGIVAQLQDYFTDASFMVFNFREGDRRSQISDILSQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQRTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYISRRNFGSDWPPSDTPLKLDYLILRILPLFNGGRGCRPVVRVYGQDASAMANRSSKLLFSTSKTKKHVRHYQQAECTVVKIGIHCRVQGDVVLECIHLDEDLVREEMMFRVMFHTAFVRSNILILNRDEIDVLWDVKDQFPKDFKAEVLFSDANAIGSICTTEIAGEDVNENESASPEEFFEVEEIFSNAADAQEVKGDYDIHAVQDIMMDDGNHKEEVTADVCLDDGDKILDSPVVVADELKNIGTKVQIDNRVPQQKLNADSGRQKSDKLLPPAPRKQPASTAKPPAAESVIAKQKVKQQEPQSAAAKPTKQKPLVSRWIPPNKGSYTNSMHISYPPSRYNSAPAALVITALSKDSNADGNLEIHLLPHLDCHILAQSKGPPPPPPPGGRAPGPPAPPRPPGGGPPPPPPFAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPNSANSLGGKSGGRRKSVGSKADRVNLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDESILDVDQVENLIKFCPTKEEMELLKAYTGDKEALGKCEQFFLELMKVPRVESKLRVFSFKIQFGSQISDFRKSLNTVNSACEEVRNSVKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLASKSPGLLDFHEDLVSLEAASKIQLKSLAEEMQAIMKGLEKVKQELNASENDGPVSDIFRKTLKEFIGVAEGQVGSVTNLYSVVGRNADALALYFGEDPVRCPFEQVTVTLLNFIRLFRKAHEENCKQAELERKKAQKEVEMEKAKGINLTKKGVK* 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7163668 7183054 - Vvi17g592 Vvi17g592 779289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g592 1010 Pfam Formin Homology 2 Domain 603 972 IPR015425 -
Vvi17g592 1010 Gene3D Protein tyrosine phosphatase superfamily 14 203 IPR029021 -
Vvi17g592 1010 SUPERFAMILY Formin homology 2 domain (FH2 domain) 570 992 - -
Vvi17g592 1010 PANTHER FORMIN-J 1 1002 - -
Vvi17g592 1010 MobiDBLite consensus disorder prediction 566 603 - -
Vvi17g592 1010 Gene3D - 204 337 - -
Vvi17g592 1010 Coils Coil 973 1002 - -
Vvi17g592 1010 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Vvi17g592 1010 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Vvi17g592 1010 SMART it6_source 595 1008 IPR015425 -
Vvi17g592 1010 Coils Coil 879 906 - -
Vvi17g592 1010 Gene3D Formin, FH2 domain 596 984 IPR042201 -
Vvi17g592 1010 ProSiteProfiles Formin homology-2 (FH2) domain profile. 596 998 IPR015425 -
Vvi17g592 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Vvi17g592 1010 SMART PTEN_C2_2 198 338 IPR014020 -
Vvi17g592 1010 MobiDBLite consensus disorder prediction 562 605 - -
Vvi17g592 1010 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vvi17g592 1010 MobiDBLite consensus disorder prediction 440 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g592 - - - vvi:109124306 813.142
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g937 . 412 832 FH2 protein (formin) Gene Family AT3G25500 64.9 9.2e-144 508.4
Vvi14g193 . 78 464 FH2 protein (formin) Gene Family AT3G25500 51.1 1.3e-102 371.7
Vvi7g937 . 397 844 FH2 protein (formin) Gene Family AT2G43800 55.6 5.4e-129 459.1
Vvi5g1358 . 92 643 FH2 protein (formin) Gene Family AT2G43800 51.7 6.6e-127 452.2
Vvi12g553 ECH 202 356 FH2 protein (formin) Gene Family AT4G15200 69.6 2.1e-55 213.8
Vvi19g414 ECH 34 173 FH2 protein (formin) Gene Family AT4G15200 71.1 1.5e-50 197.6
Vvi19g414 ECH 29 497 FH2 protein (formin) Gene Family AT5G54650 68.0 2.3e-175 613.2
Vvi12g553 ECH 210 626 FH2 protein (formin) Gene Family AT5G54650 60.4 6.4e-146 515.4
Vvi5g1358 . 390 649 FH2 protein (formin) Gene Family AT5G54650 58.5 2.2e-77 287.7
Vvi7g937 . 26 851 FH2 protein (formin) Gene Family AT5G67470 57.9 1.8e-228 789.6
Vvi14g193 . 80 452 FH2 protein (formin) Gene Family AT5G67470 50.8 3.1e-100 363.6
Vvi5g1358 . 384 647 FH2 protein (formin) Gene Family AT5G67470 70.5 2.0e-99 360.9
Vvi1g795 ECH 233 723 FH2 protein (formin) Gene Family AT1G59910 53.6 4.9e-133 472.6
Vvi14g1506 ECH 264 750 FH2 protein (formin) Gene Family AT1G59910 52.3 1.1e-127 454.9
Vvi17g677 ECH 415 870 FH2 protein (formin) Gene Family AT1G59910 52.4 7.4e-121 432.2
Vvi1g795 ECH 111 721 FH2 protein (formin) Gene Family AT1G70140 51.5 2.7e-161 566.2
Vvi17g677 ECH 412 868 FH2 protein (formin) Gene Family AT1G70140 55.5 9.3e-138 488.0
Vvi7g937 . 433 809 FH2 protein (formin) Gene Family AT5G48360 50.1 8.2e-89 325.5
Vvi14g193 . 66 467 FH2 protein (formin) Gene Family AT3G05470 67.3 4.8e-162 568.9
Vvi7g937 . 409 808 FH2 protein (formin) Gene Family AT3G05470 50.7 1.0e-103 375.2
Vvi5g1358 . 354 651 FH2 protein (formin) Gene Family AT3G05470 53.4 8.1e-77 285.8
Vvi2g901 . 1 1078 FH2 protein (formin) Gene Family AT1G31810 58.0 0.0e+00 1228.4
Vvi17g592 . 679 1000 FH2 protein (formin) Gene Family AT5G07650 75.2 4.3e-130 462.6
Vvi2g901 . 724 1054 FH2 protein (formin) Gene Family AT5G07650 61.0 1.5e-109 394.4
Vvi4g572 . 1246 1548 FH2 protein (formin) Gene Family AT5G07650 63.7 4.5e-103 372.9
Vvi11randomg8 . 663 947 FH2 protein (formin) Gene Family AT5G07650 60.0 9.8e-90 328.6
Vvi17g592 . 602 993 FH2 protein (formin) Gene Family AT5G07770 68.2 5.0e-139 491.9
Vvi2g901 . 659 1049 FH2 protein (formin) Gene Family AT5G07770 56.1 7.7e-116 414.8
Vvi4g572 . 1232 1541 FH2 protein (formin) Gene Family AT5G07770 61.3 1.1e-96 351.3
Vvi11randomg8 . 598 947 FH2 protein (formin) Gene Family AT5G07770 53.8 3.0e-91 333.2
Vvi17g592 . 602 1000 FH2 protein (formin) Gene Family AT3G32400 66.3 8.7e-145 510.8
Vvi2g901 . 659 1054 FH2 protein (formin) Gene Family AT3G32400 65.0 3.2e-139 492.3
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT3G32400 78.5 2.2e-127 453.0
Vvi11randomg8 . 598 947 FH2 protein (formin) Gene Family AT3G32400 68.6 2.0e-125 446.4
Vvi17g592 . 603 1000 FH2 protein (formin) Gene Family AT5G07780 63.4 3.0e-123 439.1
Vvi2g901 . 660 1050 FH2 protein (formin) Gene Family AT5G07780 52.9 3.8e-102 369.0
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT5G07780 61.5 2.2e-89 326.6
Vvi17g592 . 678 1007 FH2 protein (formin) Gene Family AT5G07760 73.2 8.4e-127 451.8
Vvi2g901 . 734 1050 FH2 protein (formin) Gene Family AT5G07760 62.9 3.0e-108 390.2
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT5G07760 65.9 2.9e-103 373.6
Vvi11randomg8 . 662 947 FH2 protein (formin) Gene Family AT5G07760 60.8 1.3e-90 331.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82