Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g592 ATGGCGCTGTTCAGACGGTTCTTTTATCGGAAGCCACCGGATCGGCTTCTCGAGATCTCCGAGCGAGTCTACGTATTTGATTGTTGTTTCTCCACTGACGTATTGGAAGAAGATGAATACAAAGTTTACATGGGTGGCATTGTAGCACAACTACAAGACTACTTTACTGATGCTTCTTTCATGGTGTTTAACTTTAGAGAAGGGGATAGGCGAAGCCAAATCTCAGACATATTGTCTCAGTATGACATGACAGTTATGGACTACCCTCGGCAATATGAGGGGTGTCCTCTTCTACCATTGGAGATGATCCACCATTTCTTGCGATCAAGTGAGAGTTGGTTGTCACTGGAGGGGCAACAGAATGTCTTGTTAATGCACTGTGAAAGAGGAGGATGGCCGGTGCTTGCTTTCATGCTTGCAGGTCTTTTATTATACCGAAAACAGTATAATGGGGAACAGAGAACTCTTGAAATGGTCTACAAGCAAGCTCCAAGGGAACTGCTCCATCTGTTGTCCCCTTTGAATCCACAGCCTTCCCAGTTGAGATATCTTCAGTATATTTCCAGAAGAAACTTTGGTTCAGATTGGCCTCCATCGGATACACCTCTAAAGTTGGATTATCTTATTCTTAGAATCCTTCCTCTGTTTAATGGGGGAAGGGGTTGCAGGCCGGTGGTTCGTGTTTATGGTCAGGATGCTTCAGCAATGGCAAACAGAAGTTCTAAGCTTCTGTTTTCAACTTCAAAGACAAAAAAACATGTTCGTCACTACCAACAGGCAGAGTGTACAGTAGTGAAAATAGGTATTCATTGCCGTGTTCAAGGGGATGTTGTTCTTGAATGTATCCATTTGGATGAAGATCTAGTACGTGAGGAAATGATGTTCAGAGTTATGTTCCACACAGCATTTGTCCGTTCAAATATTTTGATACTCAACCGTGATGAGATTGATGTCTTGTGGGATGTGAAGGACCAGTTCCCGAAAGACTTCAAAGCAGAGGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTTTTGAGGTTGAGGAGATCTTCAGCAATGCTGCAGATGCACAGGAGGTGAAGGGGGACTATGATATTCATGCCGTTCAAGACATTATGATGGACGATGGAAATCATAAAGAAGAGGTAACTGCAGATGTGTGCCTGGATGATGGTGATAAAATATTAGATTCCCCGGTAGTAGTTGCTGATGAGCTCAAAAACATAGGAACCAAGGTACAGATTGACAATAGGGTGCCGCAGCAAAAGTTGAATGCTGATTCTGGTAGGCAAAAGTCTGATAAATTACTGCCACCTGCACCCAGGAAACAGCCTGCTTCAACTGCAAAACCACCAGCTGCAGAGTCAGTCATAGCCAAGCAAAAAGTTAAACAGCAAGAACCTCAGAGTGCTGCTGCAAAACCTACAAAGCAAAAACCATTGGTATCTCGATGGATTCCTCCTAATAAAGGCTCCTACACTAATTCCATGCATATTTCATATCCACCATCAAGGTATAATAGTGCACCAGCTGCTCTAGTCATCACTGCTCTTTCAAAGGATTCTAATGCTGATGGCAATCTAGAGATACACTTGCTTCCTCATTTGGATTGCCACATCCTGGCCCAGAGCAAAGGCCCACCTCCACCACCTCCTCCTGGAGGTCGTGCACCTGGTCCTCCTGCACCACCTCGGCCTCCAGGTGGTGGACCTCCTCCACCTCCACCCTTTGCACCTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATTGCGCCAGAATTTGATGTCTCAGAGTTGGAGACTCTTTTCTCCGCCACAGTCCCAAATTCGGCTAATAGCTTAGGAGGTAAATCCGGTGGGAGGCGCAAGTCTGTTGGATCTAAAGCTGACAGAGTCAACCTGATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGGCTGCAGTTCTAGCAATGGATGAGTCAATTTTAGATGTTGATCAAGTGGAAAATCTCATAAAGTTCTGCCCTACTAAAGAGGAGATGGAACTTCTTAAGGCCTATACTGGTGATAAGGAGGCCCTGGGAAAGTGTGAACAGTTCTTTCTGGAGCTGATGAAAGTGCCCCGTGTGGAGTCTAAATTAAGAGTATTTTCCTTCAAGATTCAATTTGGATCTCAGATTTCAGATTTTAGAAAAAGTTTGAACACTGTAAACTCTGCATGTGAAGAGGTTCGCAATTCGGTGAAATTGAAGGAAATCATGAAGAAAATTCTTTACCTCGGGAATACATTGAACCAAGGAACTGCAAGGGGTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAGGTGCTTGCCTCTAAGTCACCAGGACTTCTAGATTTCCATGAGGATCTTGTTAGCCTGGAGGCTGCATCAAAGATACAATTGAAATCTTTAGCAGAAGAAATGCAGGCTATAATGAAGGGGTTGGAAAAGGTCAAGCAGGAGCTGAATGCATCTGAAAATGATGGTCCTGTATCGGATATTTTTCGTAAGACATTGAAAGAGTTCATTGGTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGGGCAGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGTCCGCTGCCCATTTGAACAAGTCACTGTAACCCTCTTAAACTTTATAAGACTGTTCCGGAAAGCGCATGAAGAGAACTGCAAGCAAGCTGAATTAGAGAGGAAGAAGGCTCAGAAAGAGGTTGAAATGGAGAAGGCAAAGGGAATTAACCTAACAAAGAAGGGTGTAAAGTAG 3033 44.02 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYMGGIVAQLQDYFTDASFMVFNFREGDRRSQISDILSQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQRTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYISRRNFGSDWPPSDTPLKLDYLILRILPLFNGGRGCRPVVRVYGQDASAMANRSSKLLFSTSKTKKHVRHYQQAECTVVKIGIHCRVQGDVVLECIHLDEDLVREEMMFRVMFHTAFVRSNILILNRDEIDVLWDVKDQFPKDFKAEVLFSDANAIGSICTTEIAGEDVNENESASPEEFFEVEEIFSNAADAQEVKGDYDIHAVQDIMMDDGNHKEEVTADVCLDDGDKILDSPVVVADELKNIGTKVQIDNRVPQQKLNADSGRQKSDKLLPPAPRKQPASTAKPPAAESVIAKQKVKQQEPQSAAAKPTKQKPLVSRWIPPNKGSYTNSMHISYPPSRYNSAPAALVITALSKDSNADGNLEIHLLPHLDCHILAQSKGPPPPPPPGGRAPGPPAPPRPPGGGPPPPPPFAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPNSANSLGGKSGGRRKSVGSKADRVNLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDESILDVDQVENLIKFCPTKEEMELLKAYTGDKEALGKCEQFFLELMKVPRVESKLRVFSFKIQFGSQISDFRKSLNTVNSACEEVRNSVKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLASKSPGLLDFHEDLVSLEAASKIQLKSLAEEMQAIMKGLEKVKQELNASENDGPVSDIFRKTLKEFIGVAEGQVGSVTNLYSVVGRNADALALYFGEDPVRCPFEQVTVTLLNFIRLFRKAHEENCKQAELERKKAQKEVEMEKAKGINLTKKGVK* 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7163668 7183054 - Vvi17g592 Vvi17g592 779289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g592 1010 Pfam Formin Homology 2 Domain 603 972 IPR015425 -
Vvi17g592 1010 Gene3D Protein tyrosine phosphatase superfamily 14 203 IPR029021 -
Vvi17g592 1010 SUPERFAMILY Formin homology 2 domain (FH2 domain) 570 992 - -
Vvi17g592 1010 PANTHER FORMIN-J 1 1002 - -
Vvi17g592 1010 MobiDBLite consensus disorder prediction 566 603 - -
Vvi17g592 1010 Gene3D - 204 337 - -
Vvi17g592 1010 Coils Coil 973 1002 - -
Vvi17g592 1010 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Vvi17g592 1010 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Vvi17g592 1010 SMART it6_source 595 1008 IPR015425 -
Vvi17g592 1010 Coils Coil 879 906 - -
Vvi17g592 1010 Gene3D Formin, FH2 domain 596 984 IPR042201 -
Vvi17g592 1010 ProSiteProfiles Formin homology-2 (FH2) domain profile. 596 998 IPR015425 -
Vvi17g592 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Vvi17g592 1010 SMART PTEN_C2_2 198 338 IPR014020 -
Vvi17g592 1010 MobiDBLite consensus disorder prediction 562 605 - -
Vvi17g592 1010 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vvi17g592 1010 MobiDBLite consensus disorder prediction 440 518 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g592 - - vvi:109124306 813.142