Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g593 ATGGGTTGTGTGAGCTCGAAACAGGCGGTGTCGGTGACGCCTGCTTTCGATGTTTCGGTTGCGTTTAGGGACAATGCGGGTTCGGGTCGGAGCCGTGGAGGTAGGGTGGTGGCCGCGGAATTCGAGAAGAAGAAAAAGAGCGGTGGTGGTGAGTCGGGGCTGAGTGGAAGCGAGTTAGGTGAGTCAGGGAGGGTGAGTTCGAATGGGGGTGGCGACTCCTTGAGCTTCAGATTGGGGAATTTGCACAAGTATGTGGAGGGAGAGCAAGTCGCCGCCGGATGGCCGGCATGGCTCAGCGCCGTCGCCGGCGAAGCCATTCAGGGTTGGGTCCCTCTCCGAGCCGATTCTTACCAGACATTGGAGAAGATCGGACAAGGTACATATAGCACTGTGTTCCGAGCTCGTGAACTAGAAACTGGGCGAGTAGTTGCTTTAAAGAAGGTGCGGTTTGACAACTTTGAGCCTGAGAGCGTTAGGTTTATGGCACGAGAAATAACGATACTCCGCAGGCTTGACCATCCAAACATTGTGAAATTGGACGGTTTGATTACTTCCCGATTATCGTGTAGCATATACCTTGTCTTCGAGTACATGGAACACGATCTTTCTGGACTCATGTCATGCCCTGACATCAAGTTCAGTGAGTCACAGGTCAAGTGTTACACGAAGCAGTTGTTATCTGGGCTTGAGCACTGTCACTCTCGTGGTGTGATGCATCGGGACATTAAAGGAGCAAATCTTCTGGTTAATAATGAAGGGATTTTGAAAATTGCTGATTTTGGGTTGGCAAACTTCTGTAGCTCTGTGTACAGGCAACCTCTAACCAGTCGCGTTGTGACTTTATGGTACCGTCCTCCTGAACTTTTGCTGGGGTCAACAGATTATGGAGCATCTGTGGATCTTTGGAGTGTTGGATGTGTGTTTGCCGAACTTCTTGTTGGTAGACCCATCCTTAAAGGGAGAACTGAGGTTGAACAATTACACAAGATTTTCAAGCTTTGTGGTTCCCCTCCAGATGAATACTGGAAAAAGTCTAAACTTCCTCATGCAACACTATTCAAACCACAGCAGCCTTATGAGAGTTGTCTTCGAGAGTCCTTTAAAGATCTCCCAACAATTTCTGTGGACCTGATAGAAACTTTGCTTTCAGTAGAACCATATAAGCGTGGGACTGCCTCCTCTGCTCTTGCATCTGAGTATTTCAAAACAAAGCCTTATGCATGTGACCCCTCGAGCTTGCCAAAATATTCACCTAACAAAGAGATTGATGCTAAAAATCGCGAGGAGTCAAGGAGGAAAAAGGTTGGTGGAAGAGTACGTGGGTCTGAAAAACCAACAAGAAAACCAAATGGAATCAACAAACTGGTACCAGCAGAGAATTTTACTGCTCAAACCCAAGGTCCCCATAAACTTAATGGAAATGGCTTTCATATTTTCAAGGAAGGAGATGGCAAGTTAGGTGGAGAGCCTCCAAAGCCCTCAATTGATGTACTGACAGAGGCTTCTCACATGAAGAATGCATCTCAAGGGGACATTCCCTTTTCTGGCCCTTTGCAAGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAAGGCGGAAAGATGATGCGTCCACAAGATCACACAGTAGGTCCAGTTCAAGAGGTCTTGGTTGTAATGCATTGGAACCTAACGCTGCATTGCATGCAAGGAATAATTCAAATAGGCTGGAAAATTCTGATGTTTCAAATGGTGGCCGCACTGATTCTAGAGGCTATGATTCATCTGAAATTGCCAAGCGTGTGATGCTAAAACAATGGGGCCAGTTTGAGCGTCCGGATTCATTTGATGCTTCTGATATGTACCACTCACAGGAACTATCACTGCCAATGTATCGAAGAGAGGAAATGGCAGCTAAGAGAAATCATTTGAGTTATCAGGATCAAGGGGAAAAGGTTGAATTTTCAGGACCCTTGTTATCTCAATCACATAGAGTTGATGAACTCTTAGAGAGACATGAACGCCATATCCGCCAAGCAGTCAGAAGATCATGGTTCCAAAGAGGCAAGAAAAATGGGAAGTAG 2061 46.43 MGCVSSKQAVSVTPAFDVSVAFRDNAGSGRSRGGRVVAAEFEKKKKSGGGESGLSGSELGESGRVSSNGGGDSLSFRLGNLHKYVEGEQVAAGWPAWLSAVAGEAIQGWVPLRADSYQTLEKIGQGTYSTVFRARELETGRVVALKKVRFDNFEPESVRFMAREITILRRLDHPNIVKLDGLITSRLSCSIYLVFEYMEHDLSGLMSCPDIKFSESQVKCYTKQLLSGLEHCHSRGVMHRDIKGANLLVNNEGILKIADFGLANFCSSVYRQPLTSRVVTLWYRPPELLLGSTDYGASVDLWSVGCVFAELLVGRPILKGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQQPYESCLRESFKDLPTISVDLIETLLSVEPYKRGTASSALASEYFKTKPYACDPSSLPKYSPNKEIDAKNREESRRKKVGGRVRGSEKPTRKPNGINKLVPAENFTAQTQGPHKLNGNGFHIFKEGDGKLGGEPPKPSIDVLTEASHMKNASQGDIPFSGPLQVSTSSGFAWAKRRKDDASTRSHSRSSSRGLGCNALEPNAALHARNNSNRLENSDVSNGGRTDSRGYDSSEIAKRVMLKQWGQFERPDSFDASDMYHSQELSLPMYRREEMAAKRNHLSYQDQGEKVEFSGPLLSQSHRVDELLERHERHIRQAVRRSWFQRGKKNGK* 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7210717 7218050 - Vvi17g593 Vvi17g593 779290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g593 686 CDD STKc_CDK9_like 117 401 - -
Vvi17g593 686 ProSiteProfiles Protein kinase domain profile. 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g593 686 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 679 - -
Vvi17g593 686 MobiDBLite consensus disorder prediction 42 69 - -
Vvi17g593 686 MobiDBLite consensus disorder prediction 420 447 - -
Vvi17g593 686 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
Vvi17g593 686 MobiDBLite consensus disorder prediction 531 586 - -
Vvi17g593 686 SMART serkin_6 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g593 686 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vvi17g593 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vvi17g593 686 PANTHER CELL DIVISION PROTEIN KINASE 1 679 - -
Vvi17g593 686 SUPERFAMILY Protein kinase-like (PK-like) 111 408 IPR011009 -
Vvi17g593 686 MobiDBLite consensus disorder prediction 412 453 - -
Vvi17g593 686 Gene3D Transferase(Phosphotransferase) domain 1 200 440 - -
Vvi17g593 686 Pfam Protein kinase domain 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g593 686 MobiDBLite consensus disorder prediction 559 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g593 - - - vvi:100852764 1334.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1589 Vvi17g593 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g593 Blo04g00781 Blo16g00179 . . . Bpe13g00301 Bma06g00165 . Cmo13g01141 . . . . . . Cpe20g00057 . . . . . . . . . . . . . . . Cone2ag0826 Cone16ag0190 . . Lsi02g00092 Csa01g00572 . Cme12g01970 . . . . . . . . . . . Cma13g01092 . . . . . Bhi08g01135 . . . . . . Cla04g01180 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006743 0 2 1 1 1 1 2 1 1 0 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 0 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76323 PF00069 Pkinase 1.40E-67 CL0016 Vvi PK