Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g595 ATGTCTGACGAGGAGCATCACTTTGAGTCCAAGGGCGACGCCGGAGCCTCCAAGACCTATCCTCAGCAAGCTGGCACGATCCGCAAGAACGGGTACATTGTCATTAAGTCTCGCCCTTGCAAGGTTGTGGAAGTTTCCACCTCTAAGACTGGTAAGCATGGTCATGCTAAGTGCCACTTTGTTGGGATTGACATCTTCAATGGGAAAAAGCTTGAAGATATTGTTCCATCTTCGCACAACTGTGATGTTCCTCATGTCAATCGTACTGATTACCAGCTGATTGATATTTCTGAGGATGGATTTGTTAGTTTGCTGACTGAAAATGGTAACACAAAGGATGATCTGAGGCTTCCAACTGATGACAATCTGCTGACCCAGATCAAGGATGGTTTTGCTGAGGGGAAAGACTTGGTTGTGAGTGTGATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATTGGCCCCAAGTAG 480 47.08 MSDEEHHFESKGDAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7227853 7230829 - Vvi17g595 Vvi17g595 779292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g595 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vvi17g595 159 CDD S1_eIF5A 86 156 - -
Vvi17g595 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vvi17g595 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vvi17g595 159 Gene3D - 86 158 IPR012340 -
Vvi17g595 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Vvi17g595 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Vvi17g595 159 Gene3D - 1 85 IPR014722 -
Vvi17g595 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vvi17g595 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vvi17g595 159 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g595 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vvi17g595 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g595 K03263 K02180 vvi:100852874 327.791