Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g601 ATGCGGGACGAGGAAACTGATATCCGGGTTGTCGGGTTAATGATTTCCCTAGTCTTGATCACAGGCAGAATTGTGGCTGGAGATTCTCTGGAGACTGACAGAGAAGTTCTGCTGAGTCTGAAAAAATTTCTAGAGGATAACAATCAAGTGAATCGAGGGCGATACCAGGAGTGGAATTTAAGTAGTTGGAATCCATGTGATTGGCCTGGAATTTTGTGCAGCAATGATGGGAGGGTGATCAGTGTCAACCTTTCAGATAATAGTATTTCAGGTGAAATTTTCCACAACTTCTCCGCATTGACAAAGCTTTCTCATCTTGATTTGTCGAAAAACACTCTGGGTGGCCGGATTCCGGCGGACCTGAGGCGGTGTGAAAGCCTTGTATATCTCAACCTGTCGCACAATATCATTAATGATGAACTGAACTTGACGGGGTTGAAGAGTTTGGAGGTTCTTGATCTGTCTATCAATAGGATTGGTGGCGAAATTCAGTTGACTTTTCCAGCAGGGTTCGCAAGGCTTCAGCACCTGCGCATTTTAAATCTGTGGGGAAACCATTTCACAGGGCCAATTCCCCCAGAACTGGGATCACTTTCGAGTCTTGAGGGTTTGTTTCTTGTATTGCATACTAATTCATACACTGGGGGTCCATTACCGGTTGAGCTCTCAGAAATGCCGAGTTTGGAGTTCTTGATTCTAGCCCACAATCAGTTTTCTGGAAGCATACCACCAGAATTTGGAAACATCCGGCGCCTACAAGCCCTGGATCTCTCCTTCAATAGCCTAAACGGTTCAATACCCAGTACTATTGGAAAGTTGAACTCTCTCTTGTGGTTAATGCTGGCAAACAATAGGTTTTCTGGGGAAATTCCTCCTGAGATAGGAAATTGCACTAGTTTATTGTGGTTAAACCTGGCCAACAACCAATTTTCTGGGAAAATTCCTCCGGAGTTGACAACTATTGGGAGAAATCCATTCCCAACCTTTGAAATGAATAGAAAAAACAGGGGAATCCCTGCTGGTTCAGGTGAGTGCCAAGTGCGGACACTTCAAATTTCGGGTTACGTTCAGATCAGTGGGAATCAGTTTTCAGGTGAGGTCCCTCCAGAAATAAGGAATATGCAGAACTTTAGTCTCATCCAGATGGCTGCCAATAAGTTCTATGGAAAACTTCCTCCTGCGATAGGGCAATTGCCAGTTGTAGTCCTAAACTTGTCCGAGAACAATTTTTCAGGTGAAATTCCCATGGAAATCGGCAATCTTGGGTGCTTACAAAATCTGGATTTGTCATCCAATAACTTCTCTGGTACATTTCCAACCAGCCTCAACAACTTGAGTGAGTTGAACAAGTTCAACATATCATACAATCCATTGATCTCAGGTGTAATCCCATCGACTGGGCAATTGGCAACTTTTGAGAAAGAGTCCTTCCTTGGTGACCCACTATTGGTACTTCCACCCTTCATTGGCAACCCCTCAAATCACCCTCCGCCCACTGCGAAATCGGATGGGAAGCCAAAACAAAAATTTACTTCAGCTTTTGTGTTTTTAACTCTAACAGTGGCTTTCATCATACACGATTTTGCATCAACGTTCACATATGCTGATATTTTGATGGCCACATGGATGGCATTGAAGGGGAAAAGGAGTTCCGGGCTGAAATGGAGGCGGCGTCTTGATGTAGCAATTGATGTGGCACGGGCACTAGTCTTTCTGCACCATGAGTGCTTCACTGCTATTGTTCATCGGGATGTCAAGGCCAGCAATGTTTTGCTAGACAGGAATGGGAAGGCCCGGGTCACTGATTTTGGTCTAGCTAGAGTTGTTGATGATGGGAATAGCCATGTCTCGACGATGGTGGCCGGGACAGTTGGTTATGTTGCACCTGAATATGGACAGACAGGGCAAGCCACTACAAAAGGCGATGTGTACAGTTTTGGGGTGCTGTCAATGGAGCTAGCTACTGGGAGACATGCCCTGGATGGGGGGGAAGAGTGCTTGGGGGCGGAGGAGATGCGTGAGCTGCTTCGAATTGGGATAAAATGCACAGCGGAGTCACCACAGGCAAGGCCTAATATGAAGGAGGTGCTAGCTATGCTGATCACGATTTTGAGCACCCAACAGGATTTCAGTTATGGGTCCTCTCCTCCTAGTTCTGAAATAAGAATTTACTCAATTTTGATCACAAACTCTGTCCAATTCTGTTAG 2208 45.43 MRDEETDIRVVGLMISLVLITGRIVAGDSLETDREVLLSLKKFLEDNNQVNRGRYQEWNLSSWNPCDWPGILCSNDGRVISVNLSDNSISGEIFHNFSALTKLSHLDLSKNTLGGRIPADLRRCESLVYLNLSHNIINDELNLTGLKSLEVLDLSINRIGGEIQLTFPAGFARLQHLRILNLWGNHFTGPIPPELGSLSSLEGLFLVLHTNSYTGGPLPVELSEMPSLEFLILAHNQFSGSIPPEFGNIRRLQALDLSFNSLNGSIPSTIGKLNSLLWLMLANNRFSGEIPPEIGNCTSLLWLNLANNQFSGKIPPELTTIGRNPFPTFEMNRKNRGIPAGSGECQVRTLQISGYVQISGNQFSGEVPPEIRNMQNFSLIQMAANKFYGKLPPAIGQLPVVVLNLSENNFSGEIPMEIGNLGCLQNLDLSSNNFSGTFPTSLNNLSELNKFNISYNPLISGVIPSTGQLATFEKESFLGDPLLVLPPFIGNPSNHPPPTAKSDGKPKQKFTSAFVFLTLTVAFIIHDFASTFTYADILMATWMALKGKRSSGLKWRRRLDVAIDVARALVFLHHECFTAIVHRDVKASNVLLDRNGKARVTDFGLARVVDDGNSHVSTMVAGTVGYVAPEYGQTGQATTKGDVYSFGVLSMELATGRHALDGGEECLGAEEMRELLRIGIKCTAESPQARPNMKEVLAMLITILSTQQDFSYGSSPPSSEIRIYSILITNSVQFC* 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7307382 7310961 + Vvi17g601 Vvi17g601 779298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g601 735 ProSiteProfiles Protein kinase domain profile. 427 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g601 735 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 167 207 - -
Vvi17g601 735 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 177 - -
Vvi17g601 735 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 338 530 - -
Vvi17g601 735 SMART LRR_typ_2 146 170 IPR003591 -
Vvi17g601 735 SMART LRR_typ_2 100 124 IPR003591 -
Vvi17g601 735 SMART LRR_typ_2 421 445 IPR003591 -
Vvi17g601 735 SMART LRR_typ_2 273 297 IPR003591 -
Vvi17g601 735 SMART LRR_typ_2 225 248 IPR003591 -
Vvi17g601 735 SMART LRR_typ_2 174 198 IPR003591 -
Vvi17g601 735 SUPERFAMILY L domain-like 55 474 - -
Vvi17g601 735 SMART serkin_6 472 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g601 735 ProSiteProfiles Leucine-rich repeat profile. 126 147 IPR001611 GO:0005515
Vvi17g601 735 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Vvi17g601 735 Gene3D Ribonuclease Inhibitor 332 496 IPR032675 -
Vvi17g601 735 Pfam Leucine rich repeat 81 135 IPR001611 GO:0005515
Vvi17g601 735 Pfam Protein kinase domain 553 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g601 735 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 177 - -
Vvi17g601 735 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 338 530 - -
Vvi17g601 735 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 545 718 - -
Vvi17g601 735 Gene3D Ribonuclease Inhibitor 251 325 IPR032675 -
Vvi17g601 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Vvi17g601 735 SUPERFAMILY Protein kinase-like (PK-like) 549 700 IPR011009 -
Vvi17g601 735 Gene3D Ribonuclease Inhibitor 29 165 IPR032675 -
Vvi17g601 735 Gene3D Ribonuclease Inhibitor 166 250 IPR032675 -
Vvi17g601 735 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 208 335 - -
Vvi17g601 735 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 167 207 - -
Vvi17g601 735 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 545 718 - -
Vvi17g601 735 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 208 335 - -
Vvi17g601 735 Gene3D Transferase(Phosphotransferase) domain 1 540 715 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g601 - - - vvi:100258690 458.759
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068837 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76324 PF00069 Pkinase 1.10E-24 CL0016 Vvi PK