Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g603 ATGGATGATGGGAGGAGGGGGGATGTTATGCCATTAGAGCTTGCAATGAAGAGAGAGTCTGCATATCGAAAGAAGGTAGAGATGATGTTGTCGCAACTATATGGTGGTGAATCTAGGGAAGACCCTTTCTCTTCCCAGGTGCCATCTTCAAGTCCAAGTTCAGGGCCAAGCTTATCAGGACCAAAGCGAAAAACACCGACTAGGACCTCCCAGTGCCTTCCACCTCAGCAGCTGCAACTGCTTTATAGTAGTCACACACTTGGAAACAGGAAAGATGACTTATTTTGCAAGGTCTGCCAAGTGGCATGCCCAAGCTCTTTTCATCTCAAGCAGCATCTGATAGGTCAGAAGCACAAGGACACACTTGACTTGAAATCTGGTAGAAACATTAGAGAAGAGGATGCAAATACCAGAAAATGGTGTGACTTGTGCAAAATTTGGTGCATTAACAAATATTCACTCGAACAGCATTTCAAAGGTAAAAAGCATCAAGACAACGTACAAGAGCTGGAACTAGGTGGGAAAGAAGGCCAAAGGAAAACAAATCAGGTAAAACTGTACTGCGAACTGTGTAAACTTTGGTGCATGGATGAGTATGCATTCAATCAGCACCTCAAAGGCAAAAAGCACATCCTTAACCTCCACACCTTTGAAGAGAAAAGGACGGCAAAAGGGAAAGGATTGGCTGTGGACCAAAGCTCAACTAGAAAGAACTGA 717 44.21 MDDGRRGDVMPLELAMKRESAYRKKVEMMLSQLYGGESREDPFSSQVPSSSPSSGPSLSGPKRKTPTRTSQCLPPQQLQLLYSSHTLGNRKDDLFCKVCQVACPSSFHLKQHLIGQKHKDTLDLKSGRNIREEDANTRKWCDLCKIWCINKYSLEQHFKGKKHQDNVQELELGGKEGQRKTNQVKLYCELCKLWCMDEYAFNQHLKGKKHILNLHTFEEKRTAKGKGLAVDQSSTRKN* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7311995 7316054 + Vvi17g603 Vvi17g603 779300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g603 238 MobiDBLite consensus disorder prediction 37 71 - -
Vvi17g603 238 Gene3D Classic Zinc Finger 130 176 - -
Vvi17g603 238 Gene3D Classic Zinc Finger 84 129 - -
Vvi17g603 238 Pfam Zinc-finger of C2H2 type 95 118 - -
Vvi17g603 238 Pfam Zinc-finger of C2H2 type 140 163 - -
Vvi17g603 238 Pfam Zinc-finger of C2H2 type 186 210 - -
Vvi17g603 238 SMART c2h2final6 186 210 IPR013087 -
Vvi17g603 238 SMART c2h2final6 94 118 IPR013087 -
Vvi17g603 238 SMART c2h2final6 139 163 IPR013087 -
Vvi17g603 238 SMART ZnF_U1_5 136 170 IPR003604 GO:0003676|GO:0008270
Vvi17g603 238 SMART ZnF_U1_5 183 217 IPR003604 GO:0003676|GO:0008270
Vvi17g603 238 SMART ZnF_U1_5 91 125 IPR003604 GO:0003676|GO:0008270
Vvi17g603 238 MobiDBLite consensus disorder prediction 38 71 - -
Vvi17g603 238 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 46 222 - -
Vvi17g603 238 SUPERFAMILY beta-beta-alpha zinc fingers 135 172 IPR036236 -
Vvi17g603 238 Gene3D Classic Zinc Finger 177 216 - -
Vvi17g603 238 SUPERFAMILY beta-beta-alpha zinc fingers 87 127 IPR036236 -
Vvi17g603 238 SUPERFAMILY beta-beta-alpha zinc fingers 183 214 IPR036236 -
Vvi17g603 238 PANTHER ZINC FINGER RNA-BINDING PROTEIN 46 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g603 - - - vvi:100853199 457.218
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .