Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g606 ATGGGAACAAATTTACTGTATGAGAGCTTCCCAGGAAACTACTCCACTAGGGATCTTAATATGGAAGCTGTTGGCAGTAGGTGCCTCCCTTGTAAGGATGATAAAACCTTGAAAAGTGAGCTACACTATAATGGTGTGTTGCCGCCACCTGCTCTGCCCAGACAGCTTGGGTCTGACAAGGAAGAATTAAGGCAGACCATCCTGAAGCAAGAAGTCATGTTTAACGATCAGGTGCAGGAACTCCATCGTCTTTATAGAAGACAGATGGAATTAATGAACGAAATTGAAAAGAAGCAACTCCATAAGCAGTCTGACTATGCCGTGAAGATGTCACAAGAGCCAAGGGATCTTGATTCAATTTCAACGAGACCAAACAGTTTAATTGACTTGAATCAACCTTATCAGGGGGAAGAAGCTGGAACTTCAACCTCTGTTTATTCTCTTGATCCTGGGATCAACCAGGGAGAGATCCCAGGCAGGGATCCATCTGCAAAAACAAATTCAGGATTTGGAGTTTCATCCATGGAAAGTTTTGGTAATAGTGAAACTAAAAAAAACGTGGATGCATGCTCAAGGCCGCAGGAGCATCCACCTTTTACCAATGAAGCTGGGCATAATAGAAGCACATTGGTCGATTTTCAGTTCCCATCAGTTTCAACTCGGGGGAGGCCAAGACATCATTTGGAGCGGAGTCCAATAGTGGTTTTAGCACTTCCTGCCTTTAATGGCCCTGCCCCATTGAATAAGTTCTCCAGACGATCAATTGCTAGGCCTAGGCATACTGGCAACAAGCTTCATGTGGGTAGAAGTTCGAGATGTAGTCCACAACATGGACATGTGAGGTCCAAGATCACTTCCCATGACTCCCATTTCGAGTCCATGACAAGCAGTACTGACCATGATTTCTCTCCTGGACACCCTGCCCATAAGGAGCACTTGAAGGGTTCAGATATAATGGATGTGAAATCAGAGAGGGATATGGACTTAAATTCCATTCCCCCCGCCCGTTCTGCAGATGTGGTTTCCCAACAACAGATTTGTACCATGGATAAAGGCGACAAGTCTGAAGAGAGTTGGCCAGCACTTTCTGTTCCAGGAGCTTCTGTAGTGGCACCTATTAGTCCAGAAAACCAGGAGTGTCCTCGACCTAGAGGAGAATCTGAGGAGACTCCTCTAGATTTGTCCCAAGGGAAAGGTACAGGTCCACTAGAGAAGCCTGACAAAATTGCAGCAGAGGAATCACTTTTCACTTCTTCAACTGGGATTGAAGCTTGTTTAGAGAGTGCTGCTTGTGATCCATCCAACACTTCACCCCTGTATTGGTTTGTCACTATTTGTTTGGATCCTGACACTGAGTCTAAATTAGCTTTTAGTGGCAATAATGGTGCTGAACAGGAAGGGTTGTCATGTGATGAGGTTGATTACTTTGAAGCCATGACATTGAAACTAGTTGAGCTTAAGTCAGAAGAGCACCTGTGCAAGAACAATAGCCAAAAGGAGGAAGGGACATGCTCTACCATATTTCTGAGTCAACCAAAAAAGGGCCGCCGGTGGAGACGACAGAAGGACTTTCAAAAGGAAATCCTCCCCAGCCTCGCCTCTCTCGCGAGGCATGAGGTGGCTGAAGATCTTCAGACAATAGGAGGGCTGGTGAAAGCTGCAGGTTCTCCTCCAGGAACAAAGTTGGCAAGAGATGCTGGTAAAAACAAGGAGGCAAGGGGGAGGAAGCGGATGAGAGCCTCCGTCTCCAATGTGGTGGAGAGCACTGGGTCTATGCCATTGCAACAGCCAGCTGCCACTGCTGAACCGGGGTCACAGGACAGATGGCTAACAGGGTGGGGGAGTGTAAGGCGCCGGGGTCAGAGACATCGGACAAGTAATCCTTCTCTTCTTTTAACTCAGTTCTCATGA 1911 46.83 MGTNLLYESFPGNYSTRDLNMEAVGSRCLPCKDDKTLKSELHYNGVLPPPALPRQLGSDKEELRQTILKQEVMFNDQVQELHRLYRRQMELMNEIEKKQLHKQSDYAVKMSQEPRDLDSISTRPNSLIDLNQPYQGEEAGTSTSVYSLDPGINQGEIPGRDPSAKTNSGFGVSSMESFGNSETKKNVDACSRPQEHPPFTNEAGHNRSTLVDFQFPSVSTRGRPRHHLERSPIVVLALPAFNGPAPLNKFSRRSIARPRHTGNKLHVGRSSRCSPQHGHVRSKITSHDSHFESMTSSTDHDFSPGHPAHKEHLKGSDIMDVKSERDMDLNSIPPARSADVVSQQQICTMDKGDKSEESWPALSVPGASVVAPISPENQECPRPRGESEETPLDLSQGKGTGPLEKPDKIAAEESLFTSSTGIEACLESAACDPSNTSPLYWFVTICLDPDTESKLAFSGNNGAEQEGLSCDEVDYFEAMTLKLVELKSEEHLCKNNSQKEEGTCSTIFLSQPKKGRRWRRQKDFQKEILPSLASLARHEVAEDLQTIGGLVKAAGSPPGTKLARDAGKNKEARGRKRMRASVSNVVESTGSMPLQQPAATAEPGSQDRWLTGWGSVRRRGQRHRTSNPSLLLTQFS* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7338060 7342277 + Vvi17g606 Vvi17g606 779303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g606 636 MobiDBLite consensus disorder prediction 371 405 - -
Vvi17g606 636 MobiDBLite consensus disorder prediction 551 636 - -
Vvi17g606 636 PANTHER GB|AAF67766.1 9 119 - -
Vvi17g606 636 PANTHER GB|AAF67766.1 142 633 - -
Vvi17g606 636 MobiDBLite consensus disorder prediction 582 602 - -
Vvi17g606 636 Pfam Plant protein of unknown function (DUF863) 371 624 IPR008581 -
Vvi17g606 636 Coils Coil 78 98 - -
Vvi17g606 636 MobiDBLite consensus disorder prediction 258 316 - -
Vvi17g606 636 MobiDBLite consensus disorder prediction 564 580 - -
Vvi17g606 636 PANTHER - 9 119 - -
Vvi17g606 636 PANTHER - 142 633 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g606 - - - vvi:100853516 1291.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1597 Vvi17g606 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00095 . . Cme12g01967 . . . . . . . . Sed08g2094 . . . . . . . . Bhi08g01130 Tan05g2411 . Lac10g0124 Hepe07g2485 . . Cla04g01177 Cam04g1234 Cec01g1745 Cco01g1791 Clacu04g1262 Cmu04g1241 Cre01g1535 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005746 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 2 1 1 1 1 1 4 2 39