Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g607 ATGAAAAGATCAGTGAAATCATTCCTACAAGCTCGAAGCAACCTCTCCCAGTGGACCCACAACCTAACCATCCGTCCATCTTCAACCTCTGCACTTACGCTCTGTGAAAATCCACCTCAAATAACAGAATCCAAGCATTCCCATTTGACAAAATCAATCTCAAATCATGCCCACATGAACCAAATGCTCAGCCAGATGATCATGAACTACATACCCATCGACCACCTCAATTTGATGAAGCTGATAGACTTTTCCGTGTCCTCGCATGGTTTTGCAGCCTCTGCTCTTCTCTTTACTCAGTTCTATGGATTCATTGATTCTGACCTCTGTAACTCCATGATCAGATGTTATACTGACTCGAACAAGCATTTACATTCAGTTTTTATATACACCCAGATGTGGAAAAATGGTATTTTTCCCGACTCTTCAACTTTTCCCACTGTGCTCAAATCAGTTGCGCAGTTATGCCGCCAAGAACTTGGAAAAGCGATACATTGTTGCATTATTCAAATGGGTTTTGAGTCAAATGTCTACGTAAGCACTGCACTCGTTAATATGTATGGTACTTGTTCATCGGTTAGTGATGCTCGTCAAGTGTTTGATGAAATTCCGGACAGAAATATTGTGTCGTGGAATGCTTTGATCACTGGTTACAACCACAATAGGATGTTCAGGAAAGTGATTGATGTGTTCAGAGAGATGCAGATTGCCGGGGCAAAGCCAGTGGAGGTGACCATGGTGGGGGTTCTATTGGCTTGTGCCCATTTGGGAGCTTTGAACCAGGGAAGGTGGATTGATGATTATATCGACCATAATAGATTGAGATTGAATGTGTTTGTTGGTACTGCTCTTATAGACATGTATGCCAAATGTGGGGTTGTTGATGAGGCAGAAAAGATTTTCAAAGCAATGAGGGTAAAGAACGTCTATACTTGGAATGTGTTGATCTCAGGATATGCCATGAATGGGCGGGGTGAATCTGCTTTGCAGGCTTTTTCTAGGATGATTATGGAGAAGTTTAAGCCTGATGAGGTTACTTTCTTAGGTGTACTGTGTGCTTGTTGTCACCAAGGCCTTGTCAATGAAGGGCGGACATATTTTACAAGCATGAAGGAAGAGTTTGGATTGCGACCAAGGATAGAGCACTATGGGTGCATGGTTGACCTACTTGGTCGAGCTGGATTCCTGGATGAAGCCCAGCAGCTAATACAAGCCATGAGCATGCAACCTGACCCTATAATCTGGAGGGAATTGCTAGGTGCTTGCCGGATTCATGGCAATATCCAATTGGGTGAGTTTGCAATTAAAAAACTTCTCGAGCTTGAGCCAAACAATGGTGAGAATTATGTGTTGCTAGCAAATCTATATGCTCGGGACCAAAGGTGGGATAAGGTTGGAGAAGTAAGAGAAATGATGGATTGTAGAAGAGTCCGGAAGGTCCCAGGTTGCAGTTCTATTGAAATTGATAATGTGGTTTATGAGTTTGTGGTGTCAAATTATATTAAACCAGGATTTGAGGAGGTATATAAGCTGTTGGCTGATATGAACAAGAAATTGAAATTGGCTGGTTATGTTGCAGACACTGGCATGGCTTCCTATGACATTGAGGAAGAAGAGAAGGAACACTCTCTAATGTATCATAGCGAGAAGCTTGCACTGGCATTTGGACTTCTGAAGTCTCCTTCAGGTTTGACCTTAAGGATAGTGAAGAATTTAAGGATCTGTCAGGATTGCCATGGGTTTTTCAAAATTGTTTCAAAGGTTTATAGAAGGGATATTTCTGTTAGAGATAGAAACCGATTCCACCATTTTGTTGGAGGTGCTTGTTCTTGCAAAGATTATTGGTGA 1848 42.05 MKRSVKSFLQARSNLSQWTHNLTIRPSSTSALTLCENPPQITESKHSHLTKSISNHAHMNQMLSQMIMNYIPIDHLNLMKLIDFSVSSHGFAASALLFTQFYGFIDSDLCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSCKDYW* 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7343335 7345183 + Vvi17g607 Vvi17g607 779304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g607 615 Pfam DYW family of nucleic acid deaminases 523 615 IPR032867 GO:0008270
Vvi17g607 615 PANTHER - 61 589 - -
Vvi17g607 615 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 61 589 - -
Vvi17g607 615 SUPERFAMILY TPR-like 288 464 IPR011990 GO:0005515
Vvi17g607 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Vvi17g607 615 Pfam PPR repeat family 206 254 IPR002885 -
Vvi17g607 615 Pfam PPR repeat family 307 356 IPR002885 -
Vvi17g607 615 Gene3D Tetratricopeptide repeat domain 158 260 IPR011990 GO:0005515
Vvi17g607 615 Gene3D Tetratricopeptide repeat domain 348 533 IPR011990 GO:0005515
Vvi17g607 615 Pfam PPR repeat 110 138 IPR002885 -
Vvi17g607 615 Pfam PPR repeat 382 406 IPR002885 -
Vvi17g607 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Vvi17g607 615 Pfam E motif 425 487 IPR046848 -
Vvi17g607 615 Gene3D Tetratricopeptide repeat domain 261 347 IPR011990 GO:0005515
Vvi17g607 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Vvi17g607 615 TIGRFAM PPR: pentatricopeptide repeat domain 110 142 IPR002885 -
Vvi17g607 615 TIGRFAM PPR: pentatricopeptide repeat domain 345 378 IPR002885 -
Vvi17g607 615 TIGRFAM PPR: pentatricopeptide repeat domain 209 241 IPR002885 -
Vvi17g607 615 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Vvi17g607 615 TIGRFAM PPR: pentatricopeptide repeat domain 282 309 IPR002885 -
Vvi17g607 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g607 - - - vvi:100256967 1256.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19