Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g608 ATGGTTTCGGAGAGAATTCAATCCAAGCATGTATGCGTGATCGGCGCTGGACCGTCAGGGCTGGTGGCCGCGAGGGAGCTAAGAAAAGAGGGTCACAGTGTGGTGGTGATGGAGCAAAACCATGATATTGGAGGGCAGTGGCTGTATGAACCCAAAGTGGAGGGTGAGGATGCTTTAGGGAAGAGTACATTTTTGAAGGTCCATAGCAGCGTCTATGACTCTCTGAGGCTGTTCTCTCCTAGAGAAATAATGGGGTTCAGTGATTTTCCATTTGTTGTAAAGAAAGGTAGGGACATGAGGAGATTTCCAGGGCACAGGGAGCTTCTCTTGTACCTGCAGGACTTTTGTGAATGGTTTGGGCTCAGGGAGATGATGAGGTTCAAGACAAGGGTAGAGTATGTGGGGATGCTGGATTCTGATCAAGTTGGCAGAGATTTGAAGTGGGTTGTGGAAAGCAGAGACATGGAGTCTGAAAAGGTGTCGGAGGAGGTGTTCGACGCGGTGGTGGTGGCAACCGGCCACTATTCTAAGCCTAGATTGCCTTCCATTAAAGGAATGGATGTATGGAAACGAAAGCAAATGCACAGTCACATGTACAGGGTTCCTGAGCCATTTCGCCATGAGGTGGTGGTGATAGTTGGAAACTCACATAGTGGAGAGGACGTATCCATAGGGCTTGTGGAAGTGGCAAAAGAAATACATCTGAGTTTCAAATCTCTTGATCTTTCTGAAGGTCTCTCTAAATTCATCTCCAAGCATCACAACTTGCACCTTCATTTGCAGATTGAATCCCTTCATGAAGATGGACGAGTAGTATTTGTAGATGGCTCTTGGGTCATGGCAGACACCATCATATACTGCACTGGATATTCATATTCCTTCCCATTTCTGGACACCAAAGGAATAGTAGTAGTGGATGATAACAGAGTAGGACCATTGTATGAGCACACCTTCCCTCCATTGCTAGCTCCTTCTCTATCTTTTGTCGGCATTCCTCGCAAGATCATAGCGTTCCCTTTCTTTGAATCGCAAGCAATATGGATAGCTCAGCTGCTGTCTGGGAAAAAAACACTACCCTCATTCCATGACATGATGCACTCCATTGAAGACTTCTATCGATCAAGAGAGATTGCTGGCATCCCAAAGCGTTACACTCATGAGCTTGCCGATTTTGAGTACTGTGATAAATATGGAGACAATGTTGGGTTCCCACACTTGGAAGAATGGAGGAAAGGGCTATGCGTATCGGCCGTGCTAAAGGCCATGGCCAACTTGGAGACTTTTCGTGATTCTGGGGATGAAGATGAGCTGCTGCAAGTGGCTCTTCAAAGCCCTCATTTCACTCAATTTCCTCAGTCTCCTAAATTTTTGAAGGTCCATAGTAGCATCTATGCTTCTCTGAGGCTGGCTAGTCCTAGAGAGATCGTGGGGTTCAGTGATTTTCCATTTGTGGTGAAGAAAGGTAGGGACACGAGGAGGTTTCCTGGGCACAGGGAACTTCTATGGTACCTTGAGGACTTTTGTGAATGGTTTGGGCTGAGGGAGACGATAAGGTTCAATACTAAGGTGGAGTATGTGGGGATGTTGGATTCAGATGAAGTAGGTGGAGGTTTGAAGTGGGTTGTGAGGAGCAGAGACGTCAAGTCTGAAAAGGTGGTGGAGGAGCTGTTTGATGCTGTGGTTGTGGCCACAGGCCAGTACTCTCACCCTAGGTTGCCTTCCATTAAAGGAATGGAAGCATGGAAGAGGAAGCAAATGCATAGTCACATCTACAGGGTCCCTCACCCATTTCACAATGAGGTAGTGGTGGTTGTAGGAAATGCAGCGAGTGGACAGGACATATCCATAGAGCTTGTGGATGTGGCAAAAGAAATCCATCTAAGTGCCAAATCTCTAGATATTTCTGAGGGTCTATCTAGAATTATTTCCAAACACCACAACTTGCATCTTCATCTGCAGATTGAATCCCTTCATGAAGATGGACGAGTAGTATTTGTAGATGGGTCTTGGGTCGTGGCAGACACTATCATATACTGCACCGGGTATTCATATTCCTTCCCATTTCTTGACACCAAAGGAATAGTAGCAGTGGATGATGACAGAGTAGGCCCATTGTATGAGCATACCTTCCCTCCCTCCCTCGCACCCTCTCTATCTTTTGTGGGCATTCCCAGGAAGATCCTAGGTTTCCCTTTCTTTGAATCACAAGCAATGTGGATAGCTCAGCTGCTGTCTGGGAGAAAAACATTACCATCATTCCATGATATGATGCGGTCCATTGAAGACTTCTATCAGTCAAGAGATGCCGCTGGCATTCCAAAGCATCAAACTCACGATATTGCAGATTTTGAGTACTTTGATAAATATGGAGACAATGTTGGGTTCCCACACACGGAAGAATGGAGGAAGAAGCTACTCTTATCAACCGTAGGAAATGCCCAAGTCAACTTGGAGACTTACCGTGATTCTTGGTATGATCATGAGCTGTTGCAAGTGGTTCTTCAGAGCCCTCTTTTCACTCAATCCCTTCAATCCCCATCTCAGCATCTTACCGGTCTATCTAAAGTCATTTCCAAACTCCACAACTTGCATCTTCATCTGCAGATTGAATCCCTTCATGAAGATGGACGAGTAGTATTTGTAGATGGGTCTTGGGTCTTGGCAGACACTATCATATACTGCACCGGGTATTCATATGCCTTCCCATTTCTTGACACCAAAGGAATAGTAGCAGTGGATGATGACAGAGTAGGCCCATTGTATGAGCACACCTTCCCTCCATCCCTCGCACCCTCTCTATCTTTTGTGGGCATTCCCAGGAAGATCATAGGTTTCCCTTTCTTTGAATCACAAGCAATATGGATAGCTCAGCTGCTGTCTGGGAGAAAAACATTACCATCATTCCATGAAATGATGCAGTCCATTGAAGACTTCTATCAGTCAAGAGATGCCGCTGGCATTCCAAAGCATCATACTCACGATATTGCAGATTTTGAGTACCGTGATAAATATCTAGACAATGTTGGGTTTCCACACTTGGAAGAATGGAGGAAGGAGCTAATCTTATCAGGCATAGGAAATGCCCAAGTCAACTTGGAGACTTACCGTGATGCTTGGGATGACCATGAGCTGTTGCAAGTGGCTCTTCAGAGCCCTCATTTCACCCAATCCCTTCAATCCCCATCTCAACATTTTCCCTATATATTTATTGGATATGTATCTTGTAATGACCAAGAAAAATGGTTAAAGGTGCATCGGACCACAACAAAGTTAGAATTGCTTCGAAGAAAAATAGTCAAATAG 3303 45.35 MVSERIQSKHVCVIGAGPSGLVAARELRKEGHSVVVMEQNHDIGGQWLYEPKVEGEDALGKSTFLKVHSSVYDSLRLFSPREIMGFSDFPFVVKKGRDMRRFPGHRELLLYLQDFCEWFGLREMMRFKTRVEYVGMLDSDQVGRDLKWVVESRDMESEKVSEEVFDAVVVATGHYSKPRLPSIKGMDVWKRKQMHSHMYRVPEPFRHEVVVIVGNSHSGEDVSIGLVEVAKEIHLSFKSLDLSEGLSKFISKHHNLHLHLQIESLHEDGRVVFVDGSWVMADTIIYCTGYSYSFPFLDTKGIVVVDDNRVGPLYEHTFPPLLAPSLSFVGIPRKIIAFPFFESQAIWIAQLLSGKKTLPSFHDMMHSIEDFYRSREIAGIPKRYTHELADFEYCDKYGDNVGFPHLEEWRKGLCVSAVLKAMANLETFRDSGDEDELLQVALQSPHFTQFPQSPKFLKVHSSIYASLRLASPREIVGFSDFPFVVKKGRDTRRFPGHRELLWYLEDFCEWFGLRETIRFNTKVEYVGMLDSDEVGGGLKWVVRSRDVKSEKVVEELFDAVVVATGQYSHPRLPSIKGMEAWKRKQMHSHIYRVPHPFHNEVVVVVGNAASGQDISIELVDVAKEIHLSAKSLDISEGLSRIISKHHNLHLHLQIESLHEDGRVVFVDGSWVVADTIIYCTGYSYSFPFLDTKGIVAVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKILGFPFFESQAMWIAQLLSGRKTLPSFHDMMRSIEDFYQSRDAAGIPKHQTHDIADFEYFDKYGDNVGFPHTEEWRKKLLLSTVGNAQVNLETYRDSWYDHELLQVVLQSPLFTQSLQSPSQHLTGLSKVISKLHNLHLHLQIESLHEDGRVVFVDGSWVLADTIIYCTGYSYAFPFLDTKGIVAVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKIIGFPFFESQAIWIAQLLSGRKTLPSFHEMMQSIEDFYQSRDAAGIPKHHTHDIADFEYRDKYLDNVGFPHLEEWRKELILSGIGNAQVNLETYRDAWDDHELLQVALQSPHFTQSLQSPSQHFPYIFIGYVSCNDQEKWLKVHRTTTKLELLRRKIVK* 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7384485 7411694 - Vvi17g608 Vvi17g608 779305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g608 1100 Pfam Flavin-binding monooxygenase-like 867 994 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi17g608 1100 Pfam Flavin-binding monooxygenase-like 9 238 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi17g608 1100 Pfam Flavin-binding monooxygenase-like 652 787 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi17g608 1100 Pfam Flavin-binding monooxygenase-like 261 371 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi17g608 1100 Pfam Flavin-binding monooxygenase-like 460 631 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi17g608 1100 SUPERFAMILY FAD/NAD(P)-binding domain 863 1042 IPR036188 -
Vvi17g608 1100 Gene3D - 458 825 IPR036188 -
Vvi17g608 1100 Gene3D - 11 430 IPR036188 -
Vvi17g608 1100 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 456 842 - -
Vvi17g608 1100 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 851 1057 - -
Vvi17g608 1100 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 4 451 - -
Vvi17g608 1100 Gene3D - 877 1059 IPR036188 -
Vvi17g608 1100 PANTHER DIMETHYLANILINE MONOOXYGENASE 456 842 - -
Vvi17g608 1100 PANTHER DIMETHYLANILINE MONOOXYGENASE 851 1057 - -
Vvi17g608 1100 PANTHER DIMETHYLANILINE MONOOXYGENASE 4 451 - -
Vvi17g608 1100 SUPERFAMILY FAD/NAD(P)-binding domain 8 232 IPR036188 -
Vvi17g608 1100 Gene3D - 182 287 IPR036188 -
Vvi17g608 1100 Gene3D - 574 679 IPR036188 -
Vvi17g608 1100 SUPERFAMILY FAD/NAD(P)-binding domain 458 626 IPR036188 -
Vvi17g608 1100 SUPERFAMILY FAD/NAD(P)-binding domain 645 807 IPR036188 -
Vvi17g608 1100 SUPERFAMILY FAD/NAD(P)-binding domain 253 411 IPR036188 -
Vvi17g608 1100 PRINTS Flavin-containing monooxygenase (FMO) signature 9 25 IPR000960 GO:0050660|GO:0050661
Vvi17g608 1100 PRINTS Flavin-containing monooxygenase (FMO) signature 33 57 IPR000960 GO:0050660|GO:0050661
Vvi17g608 1100 PRINTS Flavin-containing monooxygenase (FMO) signature 221 236 IPR000960 GO:0050660|GO:0050661
Vvi17g608 1100 PRINTS Flavin-containing monooxygenase (FMO) signature 274 301 IPR000960 GO:0050660|GO:0050661
Vvi17g608 1100 PRINTS Flavin-containing monooxygenase (FMO) signature 339 352 IPR000960 GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g608 - - - vvi:109121443 929.472
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g608 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00575 . . . . . Bda14g00882 . Bpe15g00590 . . . . . . . . . . . Bhi08g01128 . . Lac10g0125 Hepe07g2484 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58