Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g609 ATGGTTTCAGAGAGGAACCAATCTAAGCACGTATGCGTGATCGGGGCGGGGCCATCGGGGCTGGTGGCGGCCAGGGAGCTAAGAAAAGAGGGCCACAGTGTGGTGGTGATAGAGCAAAACCATGATATTGGAGGGCAGTGGCTGTATGAACCCAAAGTGGAGGGTGAGGAGGCTTTAGGGAAGAGTACATTTTTAAAGGTCCATAGCAGCATCTATGACTCTCTGAGGCTGTTTTCTCCTAGAGAAATCATGGGGTTCAGTGATTTTCCATTTGTTGTAAAGAAAGGTAGGGACATGAGGAGATTTCCAGGGCACAGGGAGCTTCTCTTGTACCTGCAAGACTTTTGTGAATGGTTTGGGCTCAGGGAGATGATAAGGTTCAAAACTAGAGTAGAGTATGTGGGGATGTTGGATTCTGATCAAGTTGGCAGAGATTTGAAGTGGGTTGTGAAAAGCAGGGACATGGAGTCTGAAAAGGTGGTGGAGGAGGTGTTTGACGCAGTGGTTGTGGCAACGGGCCACTACTCCAAGCCTAGGTTGCCTTCCATTAAAGGAATGGATGTCTGGAAAAGGAACCAAATGCATAGCCACATCTACAGGGATCCTGAGCCATTCCGCAAAGAGGTGGTGGTGGTTGTTGGAAATTCATTGAGTGGACAAGACATCTCTATGGAACTTGTGGATGTGGCCAAAGAAATCCATTTAAGTGCCAAATCTCTTGAAATTTCGGAGGGTCTAGCTAAAGTCATTTCCAAACACGACAGCTTGCACCTGCATCTAGAGATTGAATCCCTTCATGAAGATGGACGAGTGGTATTTGTAGATGGGTCTTGGGTCATGGCAGACACCATCATATACTGCACCGGGTATTCATATGCCTTCCCATTTCTTGACACCAAAGGAATAGTAGGAGTGGATGATGACAGAGTAGGCCCATTGTATGAGCACACCTTCCCTCCATCCCTCGCACCCTCTCTATCTTTTGTGGGCATTCCCAGAAAGCTCATAGGGTTCCCTTTCTTTGAATCACAAGCAATATGGATAGCTCAGCTACTGTCTGGGAAAAGAACATTACCATCATTCCATGACATGATGCAATCCATTAAAGACTTCTATCACTCCAGAGAGATTGCTGGCGTCCCAAAACACAATACTCACGATCTTGCCAATTTTGAGTACTGTGATAAATATGGAGATAATGTTGGGTTCCCGCACTTGGAAGAATGGAGGAAAGAGCTATGCATATCGGCCATAGTAAAGGCCGAGGTGGACTTGGAGGGTTACAGGGATGCTTGGGACGACGTCGAGCTGCTGCAAGTGGCTCTTCAAAGCCCTCATTTCACTCAATTCCCTCGATCTACTTGA 1365 47.03 MVSERNQSKHVCVIGAGPSGLVAARELRKEGHSVVVIEQNHDIGGQWLYEPKVEGEEALGKSTFLKVHSSIYDSLRLFSPREIMGFSDFPFVVKKGRDMRRFPGHRELLLYLQDFCEWFGLREMIRFKTRVEYVGMLDSDQVGRDLKWVVKSRDMESEKVVEEVFDAVVVATGHYSKPRLPSIKGMDVWKRNQMHSHIYRDPEPFRKEVVVVVGNSLSGQDISMELVDVAKEIHLSAKSLEISEGLAKVISKHDSLHLHLEIESLHEDGRVVFVDGSWVMADTIIYCTGYSYAFPFLDTKGIVGVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAIWIAQLLSGKRTLPSFHDMMQSIKDFYHSREIAGVPKHNTHDLANFEYCDKYGDNVGFPHLEEWRKELCISAIVKAEVDLEGYRDAWDDVELLQVALQSPHFTQFPRST* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7414903 7417081 - Vvi17g609 Vvi17g609 779306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g609 454 PIRSF FMO 253 403 IPR000960 GO:0050660|GO:0050661
Vvi17g609 454 PIRSF FMO 7 241 IPR000960 GO:0050660|GO:0050661
Vvi17g609 454 SUPERFAMILY FAD/NAD(P)-binding domain 7 234 IPR036188 -
Vvi17g609 454 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 4 451 - -
Vvi17g609 454 SUPERFAMILY FAD/NAD(P)-binding domain 242 413 IPR036188 -
Vvi17g609 454 Pfam Flavin-binding monooxygenase-like 9 239 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi17g609 454 Pfam Flavin-binding monooxygenase-like 261 378 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vvi17g609 454 PANTHER DIMETHYLANILINE MONOOXYGENASE 4 451 - -
Vvi17g609 454 Gene3D - 182 287 IPR036188 -
Vvi17g609 454 Gene3D - 11 431 IPR036188 -
Vvi17g609 454 PRINTS Flavin-containing monooxygenase (FMO) signature 274 301 IPR000960 GO:0050660|GO:0050661
Vvi17g609 454 PRINTS Flavin-containing monooxygenase (FMO) signature 33 57 IPR000960 GO:0050660|GO:0050661
Vvi17g609 454 PRINTS Flavin-containing monooxygenase (FMO) signature 9 25 IPR000960 GO:0050660|GO:0050661
Vvi17g609 454 PRINTS Flavin-containing monooxygenase (FMO) signature 339 352 IPR000960 GO:0050660|GO:0050661
Vvi17g609 454 PRINTS Flavin-containing monooxygenase (FMO) signature 221 236 IPR000960 GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g609 - - - vvi:100253651 910.983
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g609 Blo04g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00096 . Chy12g01520 Cme12g01966 . . . Bda14g00865 . . Bma03g00842 . Sed08g2095 . . . . . . . . Bhi08g01127 Tan05g2408 Cmetu06g2174 . Hepe07g1737 . . Cla04g01176 Cam04g1233 Cec01g1744 Cco01g1790 Clacu04g1261 Cmu04g1240 Cre01g1534 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009615 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33