Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g613 ATGGATTTCTCCTCCCCCAACCAGAAGCAAGGCCACGAACTGGTCGAATTCAAACACGTTTGCAAGTTCTGCAAGAAGAGCTTCCCCTGTGGGAGATCTTTGGGAGGCCATATGAGGTCTCATATGATCAACAGCTCTTTTGAAACTGATGAAAAGCTCAGCAAAACCAAGCTCTCATCTCTCCACAAAGCTGCAACCAATCCTGATTCATGGACTAGTGCTAATCAGAAGTTGGTCATGGATAGCCAGTCCGATACTGAAACTGCAGTCCCCAATCGCAAAAAGAGATCAAGGAGAAGAACAAGGTACATGGCCACTGCAACCTCCTCTTCTTTTTCTTTTGCTAATGCTTCTTCCTCTGTTTCTGAGATTGAGCAAGAACAAGAAGAGGTTGCTATAAGTTTGATGATGCTTTCAAGGGATTCTGGTAACTGGGGTGGTTTGAATTCTGTTGTGAAGCTGAAGAAGCTCATAAAAGATGAGAAGTTCAATCCTTCTGCTTTGGATTCGGAGGATTTCCAGTTTTACTGCAAACAATCCGAATTCGGGGCTTCTGGGAATTCAAGAAATGATTCCAAGTTGAACAAATCTGAAGTTCTGGAGACTAATAAAAGCAACAAGCTTAAGGTGAACTGCTCAAAGAAAACGACTAATAATGATGAGCTAGCCACAAAAAGATCAAAGCTCACTAAGCCCTGCAACAACCATAGCCCCAGCCGCAGCCCTGGCCCCATCCATGGCCACACTGCCAGTGCCTCTGCTGTGAAGGCTGAGACAATTTTGGGATCAAAGAAGAGTAAGGGCCATGAGTGCCCAATTTGCCTCAAGGTTTTCTCATCAGGCCAGGCATTGGGTGGTCACAAGAGATCACATTTGGTTGGTGGGTCAGATACCAGAGGCAGCCAAACCATTGTTATTCCCAAGCCCCTTCCAGAGATCAGAGACCTTCTTGATCTTAACCTTCCTGCTCCTGCAGAGGAAGAGGGCGGGTTCAAGGCATGGTGGGTTGGAAGCAGCCACAAGCATGAGCCACTGGTGGGCATGATATCAAACTGA 1056 46.4 MDFSSPNQKQGHELVEFKHVCKFCKKSFPCGRSLGGHMRSHMINSSFETDEKLSKTKLSSLHKAATNPDSWTSANQKLVMDSQSDTETAVPNRKKRSRRRTRYMATATSSSFSFANASSSVSEIEQEQEEVAISLMMLSRDSGNWGGLNSVVKLKKLIKDEKFNPSALDSEDFQFYCKQSEFGASGNSRNDSKLNKSEVLETNKSNKLKVNCSKKTTNNDELATKRSKLTKPCNNHSPSRSPGPIHGHTASASAVKAETILGSKKSKGHECPICLKVFSSGQALGGHKRSHLVGGSDTRGSQTIVIPKPLPEIRDLLDLNLPAPAEEEGGFKAWWVGSSHKHEPLVGMISN* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7475228 7477459 + Vvi17g613 Vvi17g613 779310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g613 351 Pfam C2H2-type zinc finger 269 291 - -
Vvi17g613 351 Pfam C2H2-type zinc finger 19 42 - -
Vvi17g613 351 SUPERFAMILY beta-beta-alpha zinc fingers 19 291 IPR036236 -
Vvi17g613 351 MobiDBLite consensus disorder prediction 217 249 - -
Vvi17g613 351 MobiDBLite consensus disorder prediction 228 246 - -
Vvi17g613 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 41 IPR013087 -
Vvi17g613 351 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 177 351 - -
Vvi17g613 351 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 66 228 - -
Vvi17g613 351 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 16 61 - -
Vvi17g613 351 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Vvi17g613 351 SMART c2h2final6 269 291 IPR013087 -
Vvi17g613 351 SMART c2h2final6 19 41 IPR013087 -
Vvi17g613 351 ProSitePatterns Zinc finger C2H2 type domain signature. 271 291 IPR013087 -
Vvi17g613 351 MobiDBLite consensus disorder prediction 80 100 - -
Vvi17g613 351 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 177 351 - -
Vvi17g613 351 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 66 228 - -
Vvi17g613 351 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 16 61 - -
Vvi17g613 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 291 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g613 - - - vvi:100241686 263.462
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g59 Vvi17g613 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g613 . Blo16g00175 . . . . . . . . . . Car10g00207 Car11g00174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00587 . . . . . . . . . . Cpe18g00770 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002585 2 2 1 2 2 1 4 1 1 1 1 1 4 2 2 4 1 0 4 1 2 2 2 2 2 2 2 4 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14219 PF13912 zf-C2H2_6 1.20E-06 CL0361 Vvi TF