Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g614 ATGTTCCATCCCCATGAAACCTCCTATCCCAATTTCACCTACTTGCCTCACCAATCCCATTCCACAATCCCCAACATTAGCCTTGGTCCGCTCTTCTCTCAACCTGTTCTTCATCCCACCAGCATCGATCCGTATTCTCACTCCAGCTTATATCCTTCAATTCATGTTGTATTGGGCGGCCAGGCAACAAGATATGAAGACCCAAATGCGGTTTCACAGAATTGGGTTGTTAAGAACGCTGATCCCATTACATATGAACCTGCTGTTAAGCCTTCAAATGAGAAGGCAGTAGTGTCAACAAGTTTGAACTCCTTATGGAGCAACAATCAACCTTTGGTGAATGATATGACAATTAGAATACCAGAGCAAACCAAGGTCATTCTGTCCTTGAGGTGTGAAGTTTGCAACATTGATTGTAATAGCAAAGACGTTTTGGAGAAGCATATATCAGGGAAGAAACACAACCGAAATTTACAAATTCATACTAATCAAGTTTCTACTACAATATCCACAAAAGATTCCATTGGAATGAACACTGGTAGTCTGGTAGGCCAAATTGGCAGTATAAGTCATCAAAGAATATTAGGGTCAGCAGGTGCAGCTGCTGGTCAGTCTTTGGTGGCAAAGAGATTGAAGCTTGTGGAAGGTGGTGCAGTAGCAGATTCTGTGAGGACCTGCACAATATGCAACGTTGCTTGCAATAGCCAAGTAGTGTTCCAGAAACATCTTACTGGTAAAAAGCATGCTGCCCAGGTTGGCTTAAGACCTCAACATTTAGTTGTCCAGCCTCATAGCAATGGCATATGGAGTAAAGCCCCAAAAAAACCCAAGTTTGTTCAATCTGCATGGTGTGAAGTCTGCAAAATCAATTGTAACAGCAGTGACGTCTTCACCAAACACATACTGGGAAAGAAACACCTGAAGAACTTGGAAAAACTAGCAGAACCAAAAAAGGACACCAGCACCTCTGCCTCAACTGCTGCACAGGTCACCACAAATCCGATAATAGGACCAATGGAAAGGCTGGATGCTAGTAAAGGTAAATCAACTGCTGCGGTAGAGCCAGGAAAGAGGCCAGCCCAATTGCAGACACAACAAAAGGATCTGGACATAAAGAAACAGAAAATTGTAGAAGGTGGAGCAGCAGCTGGTGCAGTTAGAGCTTGTACTATATGCAATGTGGTCTGCAATAGCCAGACAGTCTTCAACATTCATCTCTCCGGCCAGAAGCATGCTTCCATGGTGAAGAAACTGGGTGAATCCACTGCAGCATAA 1275 43.69 MFHPHETSYPNFTYLPHQSHSTIPNISLGPLFSQPVLHPTSIDPYSHSSLYPSIHVVLGGQATRYEDPNAVSQNWVVKNADPITYEPAVKPSNEKAVVSTSLNSLWSNNQPLVNDMTIRIPEQTKVILSLRCEVCNIDCNSKDVLEKHISGKKHNRNLQIHTNQVSTTISTKDSIGMNTGSLVGQIGSISHQRILGSAGAAAGQSLVAKRLKLVEGGAVADSVRTCTICNVACNSQVVFQKHLTGKKHAAQVGLRPQHLVVQPHSNGIWSKAPKKPKFVQSAWCEVCKINCNSSDVFTKHILGKKHLKNLEKLAEPKKDTSTSASTAAQVTTNPIIGPMERLDASKGKSTAAVEPGKRPAQLQTQQKDLDIKKQKIVEGGAAAGAVRACTICNVVCNSQTVFNIHLSGQKHASMVKKLGESTAA* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7501795 7507663 + Vvi17g614 Vvi17g614 779311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g614 424 Pfam Zinc-finger of C2H2 type 389 411 - -
Vvi17g614 424 Pfam Zinc-finger of C2H2 type 131 154 - -
Vvi17g614 424 Pfam Zinc-finger of C2H2 type 283 306 - -
Vvi17g614 424 Pfam Zinc-finger of C2H2 type 225 248 - -
Vvi17g614 424 SUPERFAMILY beta-beta-alpha zinc fingers 219 252 IPR036236 -
Vvi17g614 424 SUPERFAMILY beta-beta-alpha zinc fingers 388 418 IPR036236 -
Vvi17g614 424 PANTHER ZINC FINGER RNA-BINDING PROTEIN 260 420 - -
Vvi17g614 424 PANTHER ZINC FINGER RNA-BINDING PROTEIN 17 251 - -
Vvi17g614 424 SMART ZnF_U1_5 127 161 IPR003604 GO:0003676|GO:0008270
Vvi17g614 424 SMART ZnF_U1_5 221 255 IPR003604 GO:0003676|GO:0008270
Vvi17g614 424 SMART ZnF_U1_5 279 313 IPR003604 GO:0003676|GO:0008270
Vvi17g614 424 SMART ZnF_U1_5 384 418 IPR003604 GO:0003676|GO:0008270
Vvi17g614 424 Gene3D Classic Zinc Finger 364 417 - -
Vvi17g614 424 Gene3D Classic Zinc Finger 269 313 - -
Vvi17g614 424 Gene3D Classic Zinc Finger 121 162 - -
Vvi17g614 424 Gene3D Classic Zinc Finger 210 255 - -
Vvi17g614 424 SMART c2h2final6 387 411 IPR013087 -
Vvi17g614 424 SMART c2h2final6 130 154 IPR013087 -
Vvi17g614 424 SMART c2h2final6 224 248 IPR013087 -
Vvi17g614 424 SMART c2h2final6 282 306 IPR013087 -
Vvi17g614 424 PANTHER - 17 251 - -
Vvi17g614 424 PANTHER - 260 420 - -
Vvi17g614 424 SUPERFAMILY beta-beta-alpha zinc fingers 265 313 IPR036236 -
Vvi17g614 424 MobiDBLite consensus disorder prediction 347 366 - -
Vvi17g614 424 SUPERFAMILY beta-beta-alpha zinc fingers 111 161 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g614 - - - vvi:100251937 818.535
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1618 Vvi17g614 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g614 . . Bda06g00530 . . . . Bma12g00974 . . Cma10g00222 . Car10g00206 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe07g00764 . . . . . . . . . . . Cpe18g00771 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011197 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14220 PF12874 zf-met 1.90E-07 CL0361 Vvi TF