Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g617 ATGAATGCTGCTGACATTGATCATGATCTCAGTCGGGGTGAGAAGCTTCTGGGAAGTCTTGGAGGAATCTTCTCGAAGACCTGGAAGCCAATAAAGACCCGCCCAATAACAGGGCCTATTACCACAAGAGATGATCTGTCTTACAGGAAGGGCAGCCACATGGAACAGAGAGAGAAGTTAGGATTGGCTCCTGCTCCCAAGGGACGGTTGGCTACAAGAACACCACCTCCTGAACCGACCAATGCACTGCAGAAAGTTGAGGTGGAACATGCAAAGCAAGATGACACACTTTCAGATTTAAGTAATCTATTGGACGAGCTGAAGTACATGGCTGTTGACATGGGAACTGAAATTGAAAGTCATAACCGAGCCTTGGCTCCTATGGAGGATGATGTGGATGTGTTAAGTATCAGAATTAAAGATGGGAATCAACGTGCTCGTCGTTTGCTTGGCAAGTAG 459 46.84 MNAADIDHDLSRGEKLLGSLGGIFSKTWKPIKTRPITGPITTRDDLSYRKGSHMEQREKLGLAPAPKGRLATRTPPPEPTNALQKVEVEHAKQDDTLSDLSNLLDELKYMAVDMGTEIESHNRALAPMEDDVDVLSIRIKDGNQRARRLLGK* 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7520917 7524572 + Vvi17g617 Vvi17g617 779314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g617 152 MobiDBLite consensus disorder prediction 46 62 - -
Vvi17g617 152 CDD SNARE_Qc 90 148 - -
Vvi17g617 152 PANTHER SNAP25-LIKE PROTEINOUS PROTEIN SNAP33 2 152 - -
Vvi17g617 152 MobiDBLite consensus disorder prediction 35 80 - -
Vvi17g617 152 SUPERFAMILY SNARE fusion complex 82 150 - -
Vvi17g617 152 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 2 152 - -
Vvi17g617 152 Gene3D - 84 151 - -
Vvi17g617 152 SMART tSNARE_6 82 149 IPR000727 -
Vvi17g617 152 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 87 149 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g617 K18211 SNAP25; synaptosomal-associated protein 25 - vvi:100246765 300.441
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75