Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g619 ATGGGATTCCGCTTCTTCTTATTTCTTTTTCTTGCTACCCTCCCTGCGTTCTTGGCTCAAGAATTTGAAGATGCAATAATTAAAGTTGATGGGGCTACAACAGTTGCTGAAACTGATGCTAACTTCATCTGTGCTACTCTGGATTGGTGGCCTCATGATAAGTGTAACTACAACCACTGTCCATGGGGATATTCATCTGTAATAAATATGGACTTGTCTCATCCTCTTTTTGCCAAGGCAATTGAAGCTTTTAAGCATTTGAGAATAAGAATTGGAGGTTCTTTGCAAGACCAAGTATTATATGATATCGGATCTTTGAGGTCCCCTTGCCATCCTTTTAGAAAGATGAATGATGGATTATTTGGATTTTCGAAGGGATGTTTACGCATGAGTAGGTGGGATGAGCTAAACCGCTTGTTCAGTCAGACAGGAGTAATTCTGACATTTGGGTTGAATGCACTCTATGGGAGGTACCAGATTAGAAAAGGCGCATGGGCCGGAGTTTGGGACTCAAGTAACACTCAGAACTTCATAAAGTACACTATTTCCAAGGGATACCAGATTGATTCATGGGAATTTGGTAACGAGTTGAGTGGAAGTGGAGTTGGTGCAAGCGTTAATGCTGAACAGTATGGGAAGGACTTAATCAACCTTAAAGCTATCATCAATAAGCTGTATAATAACTCGAATGTCAAACCATTACTTGTAGCACCAGGAGGATTCTATGAACAGGATTGGTATGCTAAGCTTCTTCAGGTTTCGGGTTCAAGCACAGTCAATGTTGTGACACATCATATCTATAATCTGGGTGCAGGTGTAGATCCCAATCTTGTGAGTAAGATACTGAATCCCCATTACTTGAGCAGGGTAGAAGAAACATTCAAGAGCCTTGACAAAACCCTTCAAACCTGGGGCCCTTGGGCTTCTGCTTGGGTTGGAGAATCTGGTGGGGCTTATAACAGTGGTGGTCATCTGGTGTCTAACACCTTTGTAAACAGCTTTTGGTACTTAGATCAGCTTGGAATGGCATCCAAGTACCACACTAAAGTTTATTGCAGGCAGACTTTGATTGGTGGAAACTATGGTCTCCTCAACACAACCACTTTAGTTCCCAACCCTGATTATTACAGCGCCCTTCTGTGGCATCGACTCATGGGAAAAGGTGTACTTGCTGTTGATAGTACTGCCTCACCATTTTTACGCTCTTATGCCCATTGTTCAAAAGGGAAGGCAGGCATAACTTTACTCCTGATCAATTTAAGCAACCAGACCACATTCCAAATCAATGTTGAGAACAGCATGAACCTCAACTTTAAGGCAGATGAACAATTATTCAGAGAAGAGTATCATCTAACTCCAAAAGATGGGTACCTCAGAAGCCAGACCATGGTTCTAAATGGGATGCCCTTGGAGCTTACTGATGATGGAAACATCCCAAGTTTGAACCCAGTACGCCTTAATCTGAATGCACCGATATTCATCAATCCATTGTCCATTGCATTCATTGCATTCCCCAACTTTGATGCCCCAGCTTGTGCGTGA 1542 42.41 MGFRFFLFLFLATLPAFLAQEFEDAIIKVDGATTVAETDANFICATLDWWPHDKCNYNHCPWGYSSVINMDLSHPLFAKAIEAFKHLRIRIGGSLQDQVLYDIGSLRSPCHPFRKMNDGLFGFSKGCLRMSRWDELNRLFSQTGVILTFGLNALYGRYQIRKGAWAGVWDSSNTQNFIKYTISKGYQIDSWEFGNELSGSGVGASVNAEQYGKDLINLKAIINKLYNNSNVKPLLVAPGGFYEQDWYAKLLQVSGSSTVNVVTHHIYNLGAGVDPNLVSKILNPHYLSRVEETFKSLDKTLQTWGPWASAWVGESGGAYNSGGHLVSNTFVNSFWYLDQLGMASKYHTKVYCRQTLIGGNYGLLNTTTLVPNPDYYSALLWHRLMGKGVLAVDSTASPFLRSYAHCSKGKAGITLLLINLSNQTTFQINVENSMNLNFKADEQLFREEYHLTPKDGYLRSQTMVLNGMPLELTDDGNIPSLNPVRLNLNAPIFINPLSIAFIAFPNFDAPACA* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7531885 7537040 - Vvi17g619 Vvi17g619 779316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g619 513 Pfam Glycosyl hydrolase family 79, N-terminal domain 25 341 IPR005199 GO:0016020|GO:0016798
Vvi17g619 513 Gene3D Glycosidases 62 383 - -
Vvi17g619 513 PANTHER HEPARANASE-RELATED 440 512 - -
Vvi17g619 513 PANTHER HEPARANASE-RELATED 3 442 - -
Vvi17g619 513 PANTHER HEPARANASE-LIKE PROTEIN 1 3 442 - -
Vvi17g619 513 PANTHER HEPARANASE-LIKE PROTEIN 1 440 512 - -
Vvi17g619 513 SUPERFAMILY (Trans)glycosidases 39 385 IPR017853 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g70 Vvi17g619 ECH
Vvi1g806 Vvi17g619 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g619 K07964 - vvi:100257028 1030.01