Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g620 ATGGAGAACAGCGGGGAAGCAGTAGACGATCATGGCTCGGGATGGTTCGAAGTGAAAAAGAAGCATAGAAGTAGCTCAAAGTTCTCCTTACAAAGTTGGGTCGGGGGATTTTCAGGAAAACATTCGTCTACTTTTCTGCATAATCAGTCTTCTTTAAATGGAAAAAATGGAGATTCAAATGGCAAGCGTAGATCCAAATTTCCAAAGGCAGGGGGGAATTTTTCCATGCATAGCCAGGGTAGTGCTGGGAATCCTATTCCTGTATCAAATGAAGATGAAAAAGGTGTAAGTTACCTTGATAAATGTGTAGTTAATCAAGATAGTGGATGTTCCAAATCATCCCAGTCGGGTACCACACTTCCAACAAATTCTAATAGTAGAACTGGTAACGTTCAAGAAGTTCCTCAAAAGGATAAGCCTGATGTGGTTCACAAAATCAAATGGGGTGATCTTGAGGAGGATACTTTTGTACAGAATCAGGAAAGCTCTGTGGGGCCTGAAATTAAGTTTGGTGCTATTTCAGATAATAATCTGCCAGTCTGCAGGAATTCTGAGATTAGTAATGATTTGGTCTCGTGTGTTTCTTCTTGTACTGATCCTCTAGGGAACCACCTGGAGATAATATCTGGGAATGCTGATGTTGTTGCTAACGAGAATTCGTTATCTCTTGGGAATGAATCAATTGAAGGGAAATCTACAAAGGTAAATGAAATATCTTTGAAAGATATGGAAGTATTGGTTGAGGATGGTGGAACAGGACCAAAAAATGATGTTTCATATTGCAAGGAAGTTCACCATGAATGTGTCAAACTGATAAATGATTGCACTTTAAGTTCTAGTTGTCCGACTGGTGGAGATGCTGAGATGACAGTGAAACTTCAGGTACCCATCATTATGTCTCAGGATAGTCATTCAGAAATTTCTGAACTACCAGTTAGAAATGGTGATTCAACCACACTAATGGTTGTCCAAGACTCCATGTCATATCCACCTGAAAATAGTGGACCTGAAGTTTCCGTAGAATCCACTATAACAGACTCTGTTGAAGTCTCTGGGGTTGCACAGGATAGTAAAATACATCATGATGCATCAAAATTGGAGATTATGAGTTCCTCTGGAGAAGGTGATGCAGGGGAAAGCAAAGAAAGGTTTAGGCAGCGGCTTTGGTGTTTTCTATTTGAGAATCTTAATAGGGCTGTGGATGAACTTTATCTTCTTTGTGAACTAGAATGCGATCTGGAGCAGATGAAAGAGGCTATTCTTGTTCTTGAAGAAGCTGCATCTGACTTTAAAGAGCTAAATAGTAGAGTGAAGGAATTTGAGAAGGTGAAAAAATCCTCTTCTCAATTAACCGATTCTACACCAATGACCATGAAAACTGATCACCGCCGGCCTCATGCTCTCTCATGGGAGGTTCGGAGAATGACGACATCTCCACATAGAGCTGAAATACTGTCTTCATCTCTTGAGGCCTTTAAAAAAATTCAACAGGAGAGAGCTAGCATGCGCCAAGTTAATGATCCAAAAATCCCAGGGCCCGAGTTTCCTATTCAATATTGTGAAGATTCAATATTGAAGCCAAGAAAGCAGGGTGGAGTTTCTGATCTCATTCAGGGCAACTTAAATGCAGAGAAGCGGAATGTTGAACCTGTCAAGTCCAGCAAGTTAAACTCTGTGCAAAATGGCCGTGTTTCTTCACAAAACTGTTCCACTTCTGATCCAAATTCATGTAGGTTACCTGTCAAGGATGGTTCTGCTTTTTCTGGAAAAGGAAAGAGAGAACATCTTGGATTCACATCTGAATCAGATAAGCTTCTTCCTAAGAAAGATACAATGTTAACAGAAAGCAACATTGAGAAAAACCCTAAACCCATGGATCATTTGAAGAGACAAATTCCTATTGCTGAAAAGGATAAGGATAAGGAAAAGGAAAAGAGAAATGCACCTTCATGGAAATCCATGGATGCTTGGAAGGAGAAAAGGAACTGGGAGGACATACTTGCATCTCCATTTCGTGTTTCTTCTCGTGTTTCACACTCTCCAGGAATGAGCCGGAGAAGTGTTGAGCGTGCACGCATTTTGCATGATAAATTAATGACTCCTGAGAAAAGAAAGAAAACCGCTTTGGATCTGAAGAAGGAAGCAGAAGAAAAGCATGCACGGGCTATGAGGATTAGAAGTGAGTTGGAAAATGAGAGGGTTCAAAAGCTACAGCGTACATCAGAAAAATTAAATCGCGTTAACGAGTGGCAGGCTGTTCGCAGTATGAAGTTACGAGAGGGAATGTATGCTCGTCATCAGCGTAGTGAGTCTCGGCATGAAGCTTTTCTAGCCCAAGTAGTGAGAAGAGCTGGTGATGAAAGCAGTAAAGTTAATGAGGTTCGTTTCATTACATCCTTAAATGAAGAGAATAAAAAGCTTATGTTGCGTCAGAAACTTCATGATTCAGAGGTGAGGAGAGCTGAAAAACTACAGGTGATAAAAACTAAACAGAAAGAGGACATGGCAAGAGAAGAAGCTGTTTTGGAACGCCGGAAACTCATTGAAGCTGAAAAGTTGCAGCGACTTGCTGAGACACAGAGGAAAAAGGAAGAGGCCCTATTTAGAAGGGAGGAGGAACGCAAAGCATCAAGTGCAGCACGTGAAGCAAAGGCCATTGAACAACTGCGGAGAAGGGAAGTTAGAGCCAAAGCCCAGCAAGAGGAAGCTGAACTCCTGGCCCAGAAATTAGCTGAGAAACTTAGTGAAAGTGAACAACGTCGTAAGTTTTACCTGGAGCAAATACGGGAGAGAGCTTCAATGGATTTCAGGGATCAATCTTCACCTTTACTGCGTCGTTCTTTGAACAAAGACAGTCAGGGTAGATCTACCCCAACCAACAATAATGAAGATTATCAAGCAACCAGCATCTCAGGTTTGGGAAGTGCTACTATTCCAACTGGCAATGTTGGATTGCAACAATCTATGAGACGAAGGATTAAAAGGATCCGGCAAAAGCTTATGGCTCTAAAATATGAATTTCTTGAGCCACCAGTTGGTAATGAAAATGCTGGTATTGGATATAGGACAGCTATGGGAACTGCAAGAGCAAAAATTGGCAGGTGGCTTCAGGAACTCCAGAAACTCAGGCAAGCAAGGAAGGAAGGAGCTGCAAGTATAGGACTGATAACTGCTGAAATGATTAAGTTTTTGGAGGGAAAAGACCCTGAGCTGAATGCTTCTCGCCAAGCTGGTCTGGTTGATTTTATTGCTTCTGCCTTGCCTGCTTCTCACACGTCAAAACCTGAAGCTTGCCAAGTGACAATATATCTTCTGAGACTTTTGAGGGTGGTACTATCTGTGCCTGCAACCAGGAGTTATTTTCTGGCCCAGAATCTCTTGCCCCCGATTATCCCCATGCTGTCAGCTGCTCTTGAGAACTATATTAAGATCGCAGCATCTTTAAACATCCCTGGTAGTACCAGTTTGTCATCAAGCAAAGCATCAGTGGAGAATTTTGAGTCAATATCTGAAGTATTGGATGGGTTCTTATGGACTGTTACTACAATTATTGGTCATATTAGCTCTGATGAACGCCAACTTCAAATGCAGGATGGTTTGCTGGAGCTTGTGATTGCATATCAAGTTATTCACCGGCTACGGGATCTTTTTGCTCTCTATGATAGGCCCCAGGTGGAAGGAGCACCGTTTCCTTCATCTATTCTCTTAAGTATAAATCTATTGACAGTTTTAACATCCAGACCTAGAACCATTTCTTTGATTGATTGGAAATCTTTCCCAGTTGAAACAATTACAGGAAACGAAATTCAAGAAGCTAAACTTACAGAGTCTGCAGATTTTGGACATTCCTATAAGAGGCTGGCTGATATTTCAATTGAGTTGAATAATGTTGATTCAAACATGACAGATGCTTCAGATAGCTCTCAGACAAATTTGAGTGAGGATATTTCCAAGTCTTGTATACCTCAAAAAGGTGAGCAGAATTCAAAGAATATTTGCGCTGAACAAAAGACTGAGAACATATCAAGCTTGAAGCAACCGATGGCATTTCTTCTTTCTGCTATCTCTGATACTGGCCTAGTCAGTCTTCCTTCACTTCTAACAGCTGTGCTGTTGCAAGCAAACAATAGATTGTCTTCAGAACAGGGTTCTTATGTCCTTCCATCAAATTTCGAAGAAGTGGCAACTGGGGTGCTGAAGGTGTTGAACAATTTAGCTTTAATAGATATCACTTTTATGCAGAGAATGCTAGCTAGGCCAGACTTGAAAATGGAATTTTTTCATTTGATGAGTTTCCTTCTTTCCCATTGCACCAGTAAATGGAAAGTAGCTTATGATCAGGTTGGTTTGCTTCTGCTTGAATCTCTGTTGCTTCTTAGCTATTTTTCCTTGTTCCACCCTGGGAACCAAGCTGTCCTGCGATGGGGAAAAAGCCCAACCATTATTCACAAGGTGTGTGATCTACCATTTGTGTTCTTCAGCGACCCTGAGTTGATGCCAATCTTGGCCGGCACGCTAGTTGCTGCCTGCTATGGATGTGAACAGAACAAGGGTGTGGTTCAACAAGAAGTCAGTATGGACATGCTTCTTTCATTACTGAGGTCTTGTAGAAATGCTTTGCCTGGAGTTCGATCCAATTCGATCCTAGACAGTACTCGAATGGATGATTCTAGTGAATGCAATACAGTGGGACCTGAATCTAGAAAACTTCTAATGGACGTATCTTTAAGACCCAGCCGTCATAATGCAAGAAGCACCCGGGGTATTTTAGGTAAAGGCGTTCAAAGAGCAGGGCTTGGGCTTCCTCATGTTAATGCTTATGGATGTGAACTTGCTTTTGACAAACAGGAATGA 4854 41.57 MENSGEAVDDHGSGWFEVKKKHRSSSKFSLQSWVGGFSGKHSSTFLHNQSSLNGKNGDSNGKRRSKFPKAGGNFSMHSQGSAGNPIPVSNEDEKGVSYLDKCVVNQDSGCSKSSQSGTTLPTNSNSRTGNVQEVPQKDKPDVVHKIKWGDLEEDTFVQNQESSVGPEIKFGAISDNNLPVCRNSEISNDLVSCVSSCTDPLGNHLEIISGNADVVANENSLSLGNESIEGKSTKVNEISLKDMEVLVEDGGTGPKNDVSYCKEVHHECVKLINDCTLSSSCPTGGDAEMTVKLQVPIIMSQDSHSEISELPVRNGDSTTLMVVQDSMSYPPENSGPEVSVESTITDSVEVSGVAQDSKIHHDASKLEIMSSSGEGDAGESKERFRQRLWCFLFENLNRAVDELYLLCELECDLEQMKEAILVLEEAASDFKELNSRVKEFEKVKKSSSQLTDSTPMTMKTDHRRPHALSWEVRRMTTSPHRAEILSSSLEAFKKIQQERASMRQVNDPKIPGPEFPIQYCEDSILKPRKQGGVSDLIQGNLNAEKRNVEPVKSSKLNSVQNGRVSSQNCSTSDPNSCRLPVKDGSAFSGKGKREHLGFTSESDKLLPKKDTMLTESNIEKNPKPMDHLKRQIPIAEKDKDKEKEKRNAPSWKSMDAWKEKRNWEDILASPFRVSSRVSHSPGMSRRSVERARILHDKLMTPEKRKKTALDLKKEAEEKHARAMRIRSELENERVQKLQRTSEKLNRVNEWQAVRSMKLREGMYARHQRSESRHEAFLAQVVRRAGDESSKVNEVRFITSLNEENKKLMLRQKLHDSEVRRAEKLQVIKTKQKEDMAREEAVLERRKLIEAEKLQRLAETQRKKEEALFRREEERKASSAAREAKAIEQLRRREVRAKAQQEEAELLAQKLAEKLSESEQRRKFYLEQIRERASMDFRDQSSPLLRRSLNKDSQGRSTPTNNNEDYQATSISGLGSATIPTGNVGLQQSMRRRIKRIRQKLMALKYEFLEPPVGNENAGIGYRTAMGTARAKIGRWLQELQKLRQARKEGAASIGLITAEMIKFLEGKDPELNASRQAGLVDFIASALPASHTSKPEACQVTIYLLRLLRVVLSVPATRSYFLAQNLLPPIIPMLSAALENYIKIAASLNIPGSTSLSSSKASVENFESISEVLDGFLWTVTTIIGHISSDERQLQMQDGLLELVIAYQVIHRLRDLFALYDRPQVEGAPFPSSILLSINLLTVLTSRPRTISLIDWKSFPVETITGNEIQEAKLTESADFGHSYKRLADISIELNNVDSNMTDASDSSQTNLSEDISKSCIPQKGEQNSKNICAEQKTENISSLKQPMAFLLSAISDTGLVSLPSLLTAVLLQANNRLSSEQGSYVLPSNFEEVATGVLKVLNNLALIDITFMQRMLARPDLKMEFFHLMSFLLSHCTSKWKVAYDQVGLLLLESLLLLSYFSLFHPGNQAVLRWGKSPTIIHKVCDLPFVFFSDPELMPILAGTLVAACYGCEQNKGVVQQEVSMDMLLSLLRSCRNALPGVRSNSILDSTRMDDSSECNTVGPESRKLLMDVSLRPSRHNARSTRGILGKGVQRAGLGLPHVNAYGCELAFDKQE* 1618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7542209 7555873 + Vvi17g620 Vvi17g620 779317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g620 1617 MobiDBLite consensus disorder prediction 551 594 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 861 883 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 936 983 - -
Vvi17g620 1617 Coils Coil 625 645 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 552 578 - -
Vvi17g620 1617 Coils Coil 712 732 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 72 86 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 108 137 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 44 58 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 1 24 - -
Vvi17g620 1617 Coils Coil 413 443 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 44 91 - -
Vvi17g620 1617 PANTHER S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM 24 1578 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 1 32 - -
Vvi17g620 1617 Pfam S phase cyclin A-associated protein in the endoplasmic reticulum 379 480 IPR032446 -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 108 133 - -
Vvi17g620 1617 MobiDBLite consensus disorder prediction 940 983 - -
Vvi17g620 1617 Coils Coil 856 927 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g620 K24869 SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum - vvi:100262175 3020.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g620 . . Bda06g00532 . . . . Bma12g00976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo15g00327 . . Bpe07g00766 . . . . Cmo10g00171 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007144 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7 1 35