Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g621 ATGGAGATCACAGAAGAGCAGCGAAAGCGAGCCGAAGCGAACCGTCTCGCAGCCCTAGAAAAGCGTAAAGCAGCCCTTGAACCTGCTAAACAATCAGACCCATGGAAGCTCTTCAAGTGCCGAAAGGTCTCTCGCGAATCCACCAGCGCAGCTACCGCCATCCATCCTCCCAAGCCCCAAAACGCGTCAAACGATGCGTTCTTGAAACCCCATTTGACTGAAAAGTTTCGGGTCAGGCTCGAAATCTGCTCTCCAGACTCGTTCTCGATCACGCCCAAGGCGGTGCATGGTTTTGCGTACCCTGGAGAAGCTGAGTGCTTGCAAAGGCTGAATGATTGTCTTGCAAATGTTGTGCCATCGCACTACACACAAAACCACAGTGGTGGAAAAGCTTGCGTCTACAAACTTGGGGATTATGATGCAGTTTTGAGATGCTTGAAAAATTCCAAGGGCATTGAATTTGAAGAGATACCTTGGGGAACTTTCAATGTTGTTGAGAGGCTTTCACATTCCTTTGTATTAGAGCAGTGGATGCCATGCAGACCGGAACATTTGTCTGATGATAAGGTTGACGAATTGATAGGGATGCTACCTAAAAGGTTGTTAGATGCACTTTTGCCTTTCCAACTTGATGGTGTAAGATTTGGTCTGAGAAGAGGTGGTCGGTGTCTAATTGCCGATGAAATGGGGCTTGGGAAAACACTCCAGGTAAGAGTTACCACTGAATGCTGTGATATTAATGAAGGCCCTATACTTGTTGTTTGCCCAGCTATTTTGCGATTTTCATGGGCAGAAGAATTGGAGCGTTGGCTTCCCTTTTGTTTGCCTGCTGATATCCATCTTGTTTTTGGTCATCAAAATAATCCTGCCCACTTAACAAGGTGTCCAAGGGTTGTGGTTATCTCTTATACAATGCTTCACCGTTTGCGAAAGAGCATGCTTGAACGAGAATGGCCTCTCTTAATAGTTGATGAATCTCATCATTTACAATGTACAAAGAAAAAATCTGAACCTCAAAAGATAAAAGCTGTCCTTGATGTGGCGATGAAGGTCAGACGCATAGTTCTACTATCAGGAACTCCTTCTTTGTCAAGGTTGCCATATGACATTTTTCATCAGATAAACATGTTATGGCCTGGTTTGCTGGGAAGGGACAAATATGAGTTTGCAAAAATTTATTGTGCTGTCAATTTTGTCCGGGGTTCTCAAGGAAAAGTTTTCCAGGATTTCTCAAAGGGCATTCGTTTGGAGGAGCTGAATGTGTTACTTAAGCAAACTGTTATGATAAGACGTTTGAAGGAGCATGTTCTGGGAGAGTTACCACCCAAACGCCGGCAAATTATAAGATTGTTGTTGAAGAGAGCAGATATTGATTTCGCTATAGCTGCCACTAGGGTCACCAAATGTGATGCTTCAGAAAATAATGTGGCTGAAGAGAAGCCTTCAGATAATAAACCTGATGATAGTGGTGGTGCTCACAGTTCTTCAAAGAAACTTTCAAACCAACAACTTGGTATTGCAAAGCTCTCTGGATTTCTCGAATGGCTTTCTTTTCATCCAATTGTTGCAGATTCAGATGGTGTGGCAAGTTTGGATATGAAGCCCAGATGTCTTAAAATGATCATTTTTGCTCATCACCTTAAGGTTCTTGATGGAATACAAGAGTTCATATGTAAGAAAGGGATTGGATTTGTCCGCATTGATGGGAACACACTTGCCAGAGATAGACAATCAGCTGTATTGTCTTTCCGGTCATCAACAGAGGTGAAGATTGCAATAATTGGTATAACTGCTGGGGGTTTTGGACTTGATTTCTCATCAGCCCAAAATGTTGTGTTTTTGGAACTTCCTCAGTCCCCATCTATAATGCTTCAGGCCGAGGATCGAGCTCATAGGCGAGGTCAAACCAATGCAGTCAACATATATATTTTTTGTGCAAAGGATACTATGGATGAATCACATTGGCAAAATCTGAACAAAAGTCTGCGTCGTGTTTCATATACAACAAATGGGAAATATGATGCTATACAAGAACTAGTGGTAATGTTGCCACTTCAAATCTCTCAACTGAATTGCATTTCTCTGGTTTGGCAGGCTGAGGATATTTCTTATCTAGAAACATCTTGTAAAACTGATAGAAGTTGTGAAATTAGGGATGTGGGTTATGCAACAGGTTGTGATATCTCTACTAAGCTAATAAAGTTATCAAACACTGGCTTAGCTCAGGACATGCAGCCTCGTGAAGCATATATCAAAGTATCTGAAACAATAAACGATAGATTGGAAAAACATGGTGAAACTGAAATGCAGGAAGTTTCTGTTTCAAGTGGAGAATTAGAAGGAAATGCTGTTACCCTTGGCAGAGTTTCTTTTTGCAAGTTGAGCAGACAAAGTGAAGATGAGGATAAAATGCATAAGGTGAGCCAATATACTGGAAGGATCCACTTATATTCTTGCATTCCAGGGATAGATTCAAGACCAAGGCCTCTTTTTGAGAATTTCCGACCAGAGGAACTTGATCCACTACAGTCAACTGGTGTTGACAATAGCAAGAAGACAACCCTCATACCTGTGAAGGACAACCCAGCATACAGGGATGTCCTTTTAGCATTCGTCAAGGAGTGGAACAATTTAAGGCCCATCGAACAAAAAAAATTGCTTCAAAAGCCTCTGCAACTTCCTTTAACTGTTGAATTGTGCTGCCTGAGTGAAGGCATTAACCACAGTAGTGGTGGACTGCTGAAGAGGGGAAGTAAGCGACGTACTACACCTTTGGGTGATATAAGCTATCCTTTACCATCAAATGCAGTCTGGAAGAAGGTCTATCTTTGTAGTGGCTATGGGAAAAGAGTGAAAGAGTATACTCAGGGTTGGACCTTGATGGATGAGCCACTCTGTAAACTCTGTCAAACACCGTGCAAAAACAGCAATGCCAAGACACCTGATTTTTTTGAGGATCTTTTTTGTTCTTTGGGGTGCTATGAAGAATATCGTATAAGAACAAGTAACAGATCCCTTCGCCAGGAACTTTTCCAAATAGAGCATGGCATTTGCACAAGTTGCCAATTAGACTGCCACAAGCTTGTGCAGTACATAAAACCTTTATCATTGACAGGGCGACGGGAGTATATTGAGAAAGTTGCACCAAGGTTGGCAGTGCGGAAAAATTTACTGGATAAGCTTGTTAATGACCCAACTGAAGGCAATGCATGGCATGCAGACCACATTGTTCCTGTGTACCAAGGGGGAGGTGAATGCAGGCTAGAGAACATGAGGACTTTGTGTGTGGGTTGTCATTCGGATGTTACTGCAGCACAATGTGCTGAACGTCGATCAGTAAGAATCAAGGCTAAGAAACAACTCAAAGTCATCATGAACAGCCTAAAAGATGATGCAAAGATGAAACACACCTGCGGTAATTCAAAGAATCAAGGGCATTTGGAGATTCACGAGGATATACTGGAAGATGAGCTTCTAATCAAGGTTCCTGGAAGTGCATACTCTGGACAGAAAAGCACCACCACTGGAGGTGAACTCGAGGAGCTAAGTCCTTCAAAGCTTAATAATTCAGAAACCCATTGTGAAGCATCAACAGGCAGTATCTGA 3606 42.46 MEITEEQRKRAEANRLAALEKRKAALEPAKQSDPWKLFKCRKVSRESTSAATAIHPPKPQNASNDAFLKPHLTEKFRVRLEICSPDSFSITPKAVHGFAYPGEAECLQRLNDCLANVVPSHYTQNHSGGKACVYKLGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLSHSFVLEQWMPCRPEHLSDDKVDELIGMLPKRLLDALLPFQLDGVRFGLRRGGRCLIADEMGLGKTLQVRVTTECCDINEGPILVVCPAILRFSWAEELERWLPFCLPADIHLVFGHQNNPAHLTRCPRVVVISYTMLHRLRKSMLEREWPLLIVDESHHLQCTKKKSEPQKIKAVLDVAMKVRRIVLLSGTPSLSRLPYDIFHQINMLWPGLLGRDKYEFAKIYCAVNFVRGSQGKVFQDFSKGIRLEELNVLLKQTVMIRRLKEHVLGELPPKRRQIIRLLLKRADIDFAIAATRVTKCDASENNVAEEKPSDNKPDDSGGAHSSSKKLSNQQLGIAKLSGFLEWLSFHPIVADSDGVASLDMKPRCLKMIIFAHHLKVLDGIQEFICKKGIGFVRIDGNTLARDRQSAVLSFRSSTEVKIAIIGITAGGFGLDFSSAQNVVFLELPQSPSIMLQAEDRAHRRGQTNAVNIYIFCAKDTMDESHWQNLNKSLRRVSYTTNGKYDAIQELVVMLPLQISQLNCISLVWQAEDISYLETSCKTDRSCEIRDVGYATGCDISTKLIKLSNTGLAQDMQPREAYIKVSETINDRLEKHGETEMQEVSVSSGELEGNAVTLGRVSFCKLSRQSEDEDKMHKVSQYTGRIHLYSCIPGIDSRPRPLFENFRPEELDPLQSTGVDNSKKTTLIPVKDNPAYRDVLLAFVKEWNNLRPIEQKKLLQKPLQLPLTVELCCLSEGINHSSGGLLKRGSKRRTTPLGDISYPLPSNAVWKKVYLCSGYGKRVKEYTQGWTLMDEPLCKLCQTPCKNSNAKTPDFFEDLFCSLGCYEEYRIRTSNRSLRQELFQIEHGICTSCQLDCHKLVQYIKPLSLTGRREYIEKVAPRLAVRKNLLDKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVGCHSDVTAAQCAERRSVRIKAKKQLKVIMNSLKDDAKMKHTCGNSKNQGHLEIHEDILEDELLIKVPGSAYSGQKSTTTGGELEELSPSKLNNSETHCEASTGSI* 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7556256 7599691 - Vvi17g621 Vvi17g621 779318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g621 1201 MobiDBLite consensus disorder prediction 472 499 - -
Vvi17g621 1201 MobiDBLite consensus disorder prediction 1167 1201 - -
Vvi17g621 1201 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 379 IPR014001 -
Vvi17g621 1201 Coils Coil 1 21 - -
Vvi17g621 1201 Pfam Helicase conserved C-terminal domain 539 634 IPR001650 -
Vvi17g621 1201 SMART helicmild6 551 634 IPR001650 -
Vvi17g621 1201 MobiDBLite consensus disorder prediction 472 492 - -
Vvi17g621 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 431 IPR027417 -
Vvi17g621 1201 CDD SF2_C_SNF 539 645 - -
Vvi17g621 1201 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1126 - -
Vvi17g621 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 677 IPR027417 -
Vvi17g621 1201 SMART ultradead3 201 387 IPR014001 -
Vvi17g621 1201 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 691 IPR001650 -
Vvi17g621 1201 CDD HNHc 1063 1103 IPR003615 -
Vvi17g621 1201 Gene3D - 994 1129 - -
Vvi17g621 1201 Pfam HNH endonuclease 1069 1103 IPR002711 GO:0003676|GO:0004519
Vvi17g621 1201 Pfam SNF2-related domain 223 457 IPR000330 GO:0005524|GO:0140658
Vvi17g621 1201 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1126 - -
Vvi17g621 1201 Gene3D - 466 682 IPR027417 -
Vvi17g621 1201 Gene3D - 184 455 IPR038718 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g621 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-] - vvi:100267344 2283.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010723 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14221 PF00176 SNF2_N 1.50E-22 CL0023 Vvi TR