Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g623 ATGGGTCTCTTTTCCAGGTCAAATTATGAAGTTGCTGAACTGACATGGGAAAATGGCCAGCTAGCCATGCATGGACTTGGTGGGCTCCTTCCCACTGCTCCAACAAAACCCACATGGGGTAGGGCCGGAGACACGCTAGAGTCGATAGTGCACCAAGCCACGTGCCACAACCAAAACTCAAACTTCATCCACCATGCCCAGAACCTGGCCAATATGAAGTCTACAGTCGGGTCCTCCGCCCATGTACAGACCGGAAATCAAGGGTTGATGAAGAAGAGGACTCGTTCGGATTCCGCTCATTGTGGAAGAAATTTTAGTACTAATGTTCATGAAGCTGAGCGTGCAGACCGCAGTGCATGTGCTAGTGCTAGTGCCACATTTTGCAGGGACAATGAAACAACCATGATGACATGGCCCTCCTCTGAATCTCCTCGCAGCTTGAAGGCCAAAACTACAGATGAAGACTCGGCTTGTCATGGTGGATCGGAAAACCAGGATGAAGATAGGGAGACTAAAACTCAGACAGGCCGCTCTCACTCAACAAGAAGAAGCCGAGCTGCTGCTATTCATAATCAGTCGGAGCGGAGACGTCGAGATAGGATTAATCAGAAGATGAAAACTCTGCAGAAGCTAGTACCCAACTCAAGCAAGACTGATAAGGCATCAATGCTTGATGAGGTGATTGAGTACTTGAAACAACTTCAAGCACAGGTTCAGATGATGAGTGTAAGAAATATGCCTCAAATGATGATGCCTATGGGAATGCAGCAACAACTTCAAATGTCTCTCCTAGCGCGTATGGGCATGGGCGTTGGCCTTGGCATGGGCATGGGAATGCTTGATATGAGTGCCGTCCCTCGTGCTGCACCTCAAACACTCCCTTCTCTCCTCCATGCCAACCCAGTTGTTGCTGCCACTCCAACATTTGTCCCTCCTCCCTTTGTAGTGCCACCCATGATGCCATCCTCATCACAACCAAAGTCTGATGCGGGCGCCAACGCAGCAGTCCCTTTGCAGGATCCATACTGCGCTTTTCTAGCACAATCGATGAATATGGACCTCTACCACAAGATGGCAGCACTATATCGGCAACATGTCAATCACAAGGCACAACCAACAAGCAGTCCACCACACTCAAACCATGACCTAGGGGATTGA 1158 49.48 MGLFSRSNYEVAELTWENGQLAMHGLGGLLPTAPTKPTWGRAGDTLESIVHQATCHNQNSNFIHHAQNLANMKSTVGSSAHVQTGNQGLMKKRTRSDSAHCGRNFSTNVHEAERADRSACASASATFCRDNETTMMTWPSSESPRSLKAKTTDEDSACHGGSENQDEDRETKTQTGRSHSTRRSRAAAIHNQSERRRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMSVRNMPQMMMPMGMQQQLQMSLLARMGMGVGLGMGMGMLDMSAVPRAAPQTLPSLLHANPVVAATPTFVPPPFVVPPMMPSSSQPKSDAGANAAVPLQDPYCAFLAQSMNMDLYHKMAALYRQHVNHKAQPTSSPPHSNHDLGD* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7609545 7613137 + Vvi17g623 Vvi17g623 779320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g623 385 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 8 380 IPR031066 -
Vvi17g623 385 SMART finulus 191 240 IPR011598 GO:0046983
Vvi17g623 385 MobiDBLite consensus disorder prediction 147 177 - -
Vvi17g623 385 MobiDBLite consensus disorder prediction 134 204 - -
Vvi17g623 385 Gene3D - 180 245 IPR036638 GO:0046983
Vvi17g623 385 Coils Coil 191 211 - -
Vvi17g623 385 MobiDBLite consensus disorder prediction 188 204 - -
Vvi17g623 385 CDD bHLH_AtPIF_like 185 245 - -
Vvi17g623 385 Pfam Helix-loop-helix DNA-binding domain 190 235 IPR011598 GO:0046983
Vvi17g623 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Vvi17g623 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 247 IPR036638 GO:0046983
Vvi17g623 385 PANTHER TRANSCRIPTION FACTOR PIF7 8 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g623 - - - vvi:100262138 630.557
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14222 PF00010 HLH 2.90E-14 No_clan Vvi TF