Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g625 ATGGGGAGCGAGAGCAATTTAAAGGTTTGGGTATCCGATAAATTGATGTCCTTACTGGGATATTCTCAGCCCACCCTGGTTCAATACGTAGTTGGATTGGCCAAGCAAGCTTCATCTCCTGCTGATGTTGTGGGGAAGCTTGTGGAATTCGGGTTGTCTGCTTCCAGTGAAACGCGTTCTTTTGCGGAAGAGATCTTCTCAAAAGTACCCCATAAAGCTTCCGGGTTGAATGTTTATCAGAAACAAGAAAGGGAAGCAGCGATGCTCGTGAGGAAGCAGAAGACCTATGCAATTTTGGACGCTGATGACAGTGATGAGGATGGTGGTGGCATTGTTGACAATCGATCTTCCACTGCTGCCCCAGCAGCTTCTCAGTCTGAAAAAGCAGATACCCATAAGAAGCGGTTCAGGAAGAAGACTGAAAATGTAGAAGATGATGCAGATGATGAGGTGATTGCGCGGGCAGAAGAAAGTAGGCAAGTTAAAAGACGGACTTCTCAGGATGAAGATGATGACTCAGAGTTGGAAGAAGAAAGTTTGCGTGACCGAAGAGAGAGGGAGCAATTAGAGCAGAATATAAGACAACGGGATGCAGCAGGGACACGAAAGTTAACAGAGCAAAAGTTGTCGCGGAAGGAGGAAGAAGAAGCAATCCGGAGATCTAATGCTATGGAGGAAGATGACATTTCAGCTTTAAGAAAAGTTTCAAGACAAGAATATTTAAAGAAAAGGGAGCAAAAGAAACTGGAGGAGCTTAGAGATGATATAGAAGATGAACAATATCTTTTTGATGGCGTAAAGTTGACTGAAGCAGAACAGCGTGAACTAAGATACAAAAGGGAAATATACGATCTTGTGAAGAAGAGGTCAGAAGAAACTGATGATATAAATGAGTATAGAATGCCTGATGCTTATGATCAGGAAGGGGGTGTAAATCAGGAGAAGAGATTTTCTGTGGCTTTGCAGCGTTATAGGGACTCAAGTGCAAATGATAAGATGAATCCATTTGCAGAACAAGAGGCATGGGAGGAGCATCAAATTGGAAAGGCAACCTTAAAATTTGGTTCAAAAGATAAAAACCAAAAGTCAGATGACTATCAGTTAGTATTTGAGGACCAGATTGAATTCATCAAGGCATCTGTGATGGATGGTGACAAGTTTGAAGATGGTTTATTTGCTGAGTCTCATGATGATTCTGTCGCAAAATCAGAATTAGAGAAACTTCAGGAAGATAGAAAAATGTTGCCTATCTATCCATATCGAGATGAATTGCTCAAAGCAGTAGATGATCATCAGATTCTTGTTATTGTTGGGGAGACTGGTTCTGGGAAAACCACACAGATACCTCAATATCTTCATGAATCTGGGTACACAAAGCGTGGAAAGGTTGGATGTACCCAGCCACGGCGAGTTGCTGCTATGAGTGTTGCAGCTCGAGTTTCTCAGGAAATGGGCGTTAAACTTGGGCATGAGGTTGGCTATTCTATCCGTTTTGAAGATTGCACGTCAGAAAAGACGGTTCTGAAATATATGACTGATGGAATGTTATTGAGAGAATTCCTTGGTGAACCAGATCTGGCAAGCTACAGCGTGGTGATGGTGGATGAGGCCCATGAAAGAACGCTCTCAACTGATATTCTATTTGGATTAGATATTGCTCGTTTTAGACCCGATCTTAAGTTGCTTATTTCAAGTGCGACTCTTGATGCAGAAAAGTTCAGTGATTATTTTGATTCTGCTCCAATTTTTAAAATTCCTGGGAGGCGGTATCCTGTTGAAATACATTATACTAAAGCACCAGAGGCAGATTACTTAGATGCAGCCATTGTCACTGCACTTCAAATTCATGTGACTCAACCACCTGGTGATATTTTGGTGTTCCTCACTGGTCAAGAGGAAATTGAAACAGCTGAGGAAATCATGAAGCACAGGACAAGGGGTTTAGGGACAAAGATTGCAGAGCTGATAATCTGCCCTATATATGCAAACCTGCCAACTGAGCTGCAGGCTAATATATTTGAACCCACTCCTGAAGGAGCACGTAAGGTTGTCCTGGCCACAAACATTGCAGAAACGTCATTGACAATCGATGGGATCAAGTATGTCATTGATCCAGGATTCTGTAAGATGAAATCTTATAATCCACGGACTGGCATGGAGTCATTACTAGTAAATCCCATCTCTAAAGCATCAGCCATGCAAAGGGCTGGTCGATCTGGACGAACTGGTCCTGGAAATGCCTTAAACAGACTTGGGGAGTTGACGAAGGTGGGGAGAAGGATGGCAGAATTCCCCCTTGATCCTATGCTCTCCAAGATGATAGTGGCAGCTGACAACTACAAGATGAATTTTCACACTGGCAATGTTGGGGACCATATTGCATTGTTAAAGGTCTACAGTTCTTGGAAGGAAACTAACTACTCAACTCAGTGGTGCTATGAAAATTATATTCAGGTCAGGAGTATGAAACGTGCCAGAGATGTGAGAGACCAGTTGGAGGGGCTCTTGGAGAGGGTTGAAATTGAACTTGCATCCAACCCCAATGATTTAGATGCAATAAAGAAGTCTATAACAGCTGGTTTTTTTCCACACTCTGCAAGACTGCAGAAGAATGGATCTTATCGAACAGTTAAACACCCCCAGACTGTTCACATTCACCCAAGCTCGGGTTTAGCACAGGTGCTTCCAAGGTGGGTGATATACCATGAATTGGTTCTTACAACCAAGGAGTACATGAGACAGGTTACTGAACTAAAGCCAGAGTGGCTGGTGGAGATAGCTCCTCACTTCTACCAACTGAAAGATGTTGAAGACCCTGGATCAAAGAAAATGCCTCGAACTGAAGGACGTGCTGTGAAGGACTGA 2865 43.04 MGSESNLKVWVSDKLMSLLGYSQPTLVQYVVGLAKQASSPADVVGKLVEFGLSASSETRSFAEEIFSKVPHKASGLNVYQKQEREAAMLVRKQKTYAILDADDSDEDGGGIVDNRSSTAAPAASQSEKADTHKKRFRKKTENVEDDADDEVIARAEESRQVKRRTSQDEDDDSELEEESLRDRREREQLEQNIRQRDAAGTRKLTEQKLSRKEEEEAIRRSNAMEEDDISALRKVSRQEYLKKREQKKLEELRDDIEDEQYLFDGVKLTEAEQRELRYKREIYDLVKKRSEETDDINEYRMPDAYDQEGGVNQEKRFSVALQRYRDSSANDKMNPFAEQEAWEEHQIGKATLKFGSKDKNQKSDDYQLVFEDQIEFIKASVMDGDKFEDGLFAESHDDSVAKSELEKLQEDRKMLPIYPYRDELLKAVDDHQILVIVGETGSGKTTQIPQYLHESGYTKRGKVGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAIVTALQIHVTQPPGDILVFLTGQEEIETAEEIMKHRTRGLGTKIAELIICPIYANLPTELQANIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVNPISKASAMQRAGRSGRTGPGNALNRLGELTKVGRRMAEFPLDPMLSKMIVAADNYKMNFHTGNVGDHIALLKVYSSWKETNYSTQWCYENYIQVRSMKRARDVRDQLEGLLERVEIELASNPNDLDAIKKSITAGFFPHSARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELKPEWLVEIAPHFYQLKDVEDPGSKKMPRTEGRAVKD* 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7636531 7658790 + Vvi17g625 Vvi17g625 779322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g625 954 Gene3D - 380 588 IPR027417 -
Vvi17g625 954 MobiDBLite consensus disorder prediction 127 145 - -
Vvi17g625 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 837 IPR027417 -
Vvi17g625 954 MobiDBLite consensus disorder prediction 100 222 - -
Vvi17g625 954 PANTHER ATP-DEPENDENT RNA HELICASE 777 951 - -
Vvi17g625 954 PANTHER ATP-DEPENDENT RNA HELICASE 113 747 - -
Vvi17g625 954 PANTHER ATP-DEPENDENT RNA HELICASE 747 781 - -
Vvi17g625 954 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 853 929 IPR011709 -
Vvi17g625 954 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 425 586 IPR014001 -
Vvi17g625 954 MobiDBLite consensus disorder prediction 152 169 - -
Vvi17g625 954 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 530 539 IPR002464 -
Vvi17g625 954 SMART helicmild6 638 743 IPR001650 -
Vvi17g625 954 SMART ultradead3 413 595 IPR014001 -
Vvi17g625 954 Coils Coil 172 192 - -
Vvi17g625 954 Coils Coil 235 262 - -
Vvi17g625 954 MobiDBLite consensus disorder prediction 177 222 - -
Vvi17g625 954 Pfam Helicase conserved C-terminal domain 615 743 IPR001650 -
Vvi17g625 954 Coils Coil 822 842 - -
Vvi17g625 954 Gene3D - 589 755 IPR027417 -
Vvi17g625 954 Pfam Helicase associated domain (HA2) 746 782 IPR007502 GO:0004386
Vvi17g625 954 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 609 781 IPR001650 -
Vvi17g625 954 CDD SF2_C_RHA 590 745 - -
Vvi17g625 954 PANTHER OS05G0389800 PROTEIN 113 747 - -
Vvi17g625 954 PANTHER OS05G0389800 PROTEIN 777 951 - -
Vvi17g625 954 PANTHER OS05G0389800 PROTEIN 747 781 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g625 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - vvi:100244993 1414.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39