Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g626 ATGGTGAAGATCTGTTGCATTGGAGCTGGATATCAGTGCAGAGGAAGGAACCTGTTTTTTAGCACCAATGTGGAAAAACATATCTCTGAGGCAGACATAATCTTTGTTTCTGTCAACACCCCAACAAAAACTCGGGGCCTTGGAGCTGGGAAAGCTGCAGATTTGACATACTGGGAGAGTGCAGCCCGAATGATTGCTGATGTCAAGGGCATCAGCTATCAAATTCTCTCGAACCCAGAATTCCTTGCTGAGGAGCTCTCAAAGTTAGCTGCCAACGCCTTCTTGGCTCAGAGGATTTCATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACTGGTGCTGATGTTTCTGAGGTTTCCCATGCTATTGGTAAGGATTCAAGAATCGGGCCTAAGTTTCTCAATGCCAGTGTTGGTTTTGGTGGATCCTGTTTTCAGAAGGACATCCTGAACTTGATCTATATTTGTGAGTGCAATGGCCTCCCTGAGGTTGCAAACTACTGGAAACAAGTCATTAAGGTGAATGACTACCAAAAGAACAGATTCGTGAACCGGGTTGTCGCCTCCATGTTTAACACCGTCTCAGGTAAGAAGATTGCCATACTTGGTTTTGCTTTCAAGAAGGATACAGGTGACACAAGAGAAACTCCTGCAATAGACGTTTGCAAGGGACTGTTGGGGGATAAGGCAAGTTTGAGCATATATGATCCACAGGTCACAGGAGATCAGATCCAGAGGGAAATCTCAATGAACAAGTTTGATTGGGACCATCCAGCAACAAGGGATGCCCATGGGATCTGCATTCTTACTGAGTGGGATGAATTCAAGACTCTTGACTACCAGAGGATCTTCAATAACATGCAGAAGCCTGCCTTTGTGTTTGATGGCCGCAACATAGTGAACATTGAGAAGCTGAGGGAGATTGGATTTATCGTGTACTCAATTGGAAAGCCATTAGATCCATGGCTCAAGGACATGCCTGCTATCGCATAA 993 45.42 MVKICCIGAGYQCRGRNLFFSTNVEKHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVKGISYQILSNPEFLAEELSKLAANAFLAQRISSVNAMSALCEATGADVSEVSHAIGKDSRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEVANYWKQVIKVNDYQKNRFVNRVVASMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKASLSIYDPQVTGDQIQREISMNKFDWDHPATRDAHGICILTEWDEFKTLDYQRIFNNMQKPAFVFDGRNIVNIEKLREIGFIVYSIGKPLDPWLKDMPAIA* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7659525 7662326 - Vvi17g626 Vvi17g626 779323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g626 330 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 85 176 IPR014026 GO:0016616|GO:0051287
Vvi17g626 330 Gene3D - 11 75 - -
Vvi17g626 330 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 186 313 IPR036220 -
Vvi17g626 330 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 14 68 IPR001732 GO:0016616|GO:0051287
Vvi17g626 330 Gene3D - 113 326 - -
Vvi17g626 330 SMART UDPG_MGDP_dh_C_a_2_a 200 302 IPR014027 GO:0016616|GO:0051287
Vvi17g626 330 Gene3D - 84 112 - -
Vvi17g626 330 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 84 330 - -
Vvi17g626 330 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 12 68 - -
Vvi17g626 330 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 200 301 IPR014027 GO:0016616|GO:0051287
Vvi17g626 330 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 85 181 IPR008927 -
Vvi17g626 330 PIRSF UDPglc_DH_bac 82 319 IPR028357 GO:0000271|GO:0003979
Vvi17g626 330 PIRSF UDPglc_DH_bac 10 76 IPR028357 GO:0000271|GO:0003979
Vvi17g626 330 PIRSF UDPglc_DH_bac 66 85 IPR028357 GO:0000271|GO:0003979
Vvi17g626 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 86 IPR036291 -
Vvi17g626 330 PIRSF UDPglc_GDPman_dh 9 77 IPR017476 GO:0016616
Vvi17g626 330 PIRSF UDPglc_GDPman_dh 74 317 IPR017476 GO:0016616
Vvi17g626 330 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 12 68 IPR028356 GO:0003979
Vvi17g626 330 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 84 330 IPR028356 GO:0003979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g626 K00012 UGDH, ugd; UDPglucose 6-dehydrogenase [EC:1.1.1.22] - vvi:100250128 594.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g58 Vvi17g626 ECH
Vvi14g1620 Vvi17g626 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g626 . . . . . . . . . . Cma10g00227 . Car10g00212 . . . . . . . . . . . Cla06g01552 Cam06g1713 Cec06g1774 Cco06g1775 Clacu06g1681 Cmu06g1626 Cre06g2439 . . Cone2ag0525 Cone16ag0488 . . . . . . . . . . . . . Cmo10g00238 . . . . . . Cpe18g00766 . . . . . . . . . . . . . . Lsi06g01426 Csa01g00279 Chy02g02454 Cme02g01842
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000749 3 5 3 2 3 4 3 4 4 3 3 4 3 3 3 3 4 5 3 4 4 2 2 3 3 3 2 2 3 2 95