Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g628 ATGGCGACGGCGAGAACTGTGAAGGATGTTTCTCCTCACGAGTTTGTCAACGCTTATGCCGCTCATCTCAAACGCTCCGGCAAGATTGAACTTCCTCACTGGACTGATATTGTGAAGACTGCTACATTCAAGGAGCTTGCCCCATATGATCCTGATTGGTACTATATTAGAGCTGCTTCCATGGCAAGGAAAATTTACTTGAGGGGTGGCATTGGTGTTGGTGCCTTCCGGAGGATTTATGGTGGAAGCAAGAGGAATGGCAGTCGCCCACCCCATTTCTGTAAGAGCAGTGGTTCTATTGCTCGCCACATACTCCAGCAATTGCAGACGATGAACATCATTGAACTTGATTCAAAGGGGGGAAGGAGAATCACATCTAGTGGCCAGAGGGATCTAGATCAAGTTGCCGGACGGATTGCAGTTGCCCATTGA 432 48.61 MATARTVKDVSPHEFVNAYAAHLKRSGKIELPHWTDIVKTATFKELAPYDPDWYYIRAASMARKIYLRGGIGVGAFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLQTMNIIELDSKGGRRITSSGQRDLDQVAGRIAVAH* 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7682412 7685594 - Vvi17g628 Vvi17g628 779325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g628 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Vvi17g628 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi17g628 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi17g628 143 SUPERFAMILY Winged helix DNA-binding domain 6 141 IPR036390 -
Vvi17g628 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi17g628 143 PANTHER 40S RIBOSOMAL PROTEIN S19-3 3 142 - -
Vvi17g628 143 Gene3D - 1 142 IPR036388 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g57 Vvi17g628 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g628 K02966 - vvi:100255295 292.352