Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g629 ATGAACATGATAAAAGTTTCTAATACAATGGGCATTGAACCAAAGCCATTTGACCCTAAAATGTACGTAGAAGAGGACACATTTGTGACAGATGAATCTGGATCCAAGAAACGCATGCGCTTGGAGAACAACATTGTCCGCTGGAGGAATGTTAAAAATCCAGATGGCACAACATCCTATGAGAGCAATGCGCGTTTTGTGAGATGGTCGGATGGCAGTTTACAGCTATTAATTGGGAATGAAGTTCTTGATATATCAGTGCAAGATGCCCAGCATGACCAATCACACCTTTTTCTTAGACATGGAAAGGGAATTCTCCAATCGCAAGGGAGAATTTTGAGAAAGATGAGATTTATGCCCTCGTCTTTGTCATCGAATTCTCACAGGTTGTTAACAGCTCTTGTTGATTCACGACATAAAAAGGTTTATAAGATTAAGAACTGCATCACAGACATTGATCCTGAGAGGGAAAAGGAGGAAAAAGAAAAGGCTGTGAGTCAAACAATCAGAGCTAATCAACTTCTTAACCGAAAGCGGGAGAAGGTGAATCGAAAGTATACACAAACAGTGGACAGGGGGCGCCAACTGTCCCCTGGATTCTTGGAGGAAGCACTGGATGAGGATGACGAGCCGGATTATCATGATTCTCACCGCCATCGTCGTCGGTTTGAGGATGATCTTGAAATGGATACTCAAGCTGAAAAACGTATTTTTAATGTGAAGAAGGGACATAAAGACATTCCTCACAAATCATCCTTGTCGGCTATTAAATCATCTAGGCGTCCAGTGGATTTCTCTGACAGTGAGAGAGAGGAGTCTGAGTATGAAAGCGATGGGGAGGAAGATGAGAGGTCTTTCTCCCGGAAGAGGGCAGAGGAACCAGAGGAGGAATATGCTGAAGAGGAAGAAGAGGAAGATGAACATGATGAAGAAGAGGCTGAAGCGAATGAAGAATCAGAGGAGGTTGAGGAACCAAAGCAAAAGGGTAAGGAGTATGCCAAGCGCAAGGGAATTGAATCAGATGAGGACTCTCCTCCAAGAAAGAGTGCTAGCCACCGGCGAATGGCATTTGTTTATGATAGTGATGAGGAGTAA 1095 43.56 MNMIKVSNTMGIEPKPFDPKMYVEEDTFVTDESGSKKRMRLENNIVRWRNVKNPDGTTSYESNARFVRWSDGSLQLLIGNEVLDISVQDAQHDQSHLFLRHGKGILQSQGRILRKMRFMPSSLSSNSHRLLTALVDSRHKKVYKIKNCITDIDPEREKEEKEKAVSQTIRANQLLNRKREKVNRKYTQTVDRGRQLSPGFLEEALDEDDEPDYHDSHRHRRRFEDDLEMDTQAEKRIFNVKKGHKDIPHKSSLSAIKSSRRPVDFSDSEREESEYESDGEEDERSFSRKRAEEPEEEYAEEEEEEDEHDEEEAEANEESEEVEEPKQKGKEYAKRKGIESDEDSPPRKSASHRRMAFVYDSDEE* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7701815 7708142 - Vvi17g629 Vvi17g629 779326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g629 364 MobiDBLite consensus disorder prediction 180 218 - -
Vvi17g629 364 MobiDBLite consensus disorder prediction 321 364 - -
Vvi17g629 364 Coils Coil 291 321 - -
Vvi17g629 364 MobiDBLite consensus disorder prediction 296 320 - -
Vvi17g629 364 MobiDBLite consensus disorder prediction 238 364 - -
Vvi17g629 364 MobiDBLite consensus disorder prediction 281 295 - -
Vvi17g629 364 Pfam Leo1-like protein 3 162 IPR007149 GO:0006368|GO:0016570|GO:0016593
Vvi17g629 364 PANTHER BNAANNG06810D PROTEIN 1 364 - -
Vvi17g629 364 PANTHER LEO1 PROTEIN 1 364 IPR007149 GO:0006368|GO:0016570|GO:0016593
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g629 K15177 LEO1; RNA polymerase-associated protein LEO1 - vvi:100260418 632.098
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g629 . Blo16g00172 . . . Bpe13g00308 Bma06g00156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005345 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 5 2 2 40