Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g636 ATGGGAATTGAGGGATCTGCCCTTTGGCCTGCTGGACCAGTAACTCTGGCTATGGGACTTCACATTCCAAAGCTTATTGAGGCTGGAATCATAGACAGTTATGGAAATCCTATAAAATCTGAGTTGATCCGGCTGTCGAAGGATATCCCTGCGTTTAGCAGCACCAATCTTTCATGGAACTCAACAGATGATCCAACGATTCGGCAAATTTCATTTGAATATGCTTTCAGGCTCAGCCAAACTGCTAAAATTTCCAACTGGCTTCTTTGTAACTCATTCTATGAACTTGACTCATCATCTTTTGATTTGATTCCCAACGTATTAACCCTTGGACCTTTACTTGCAAGCAATCGTCCTGGATCTTCTGCTGGAAACTTGTGGCCTAATGATCCAACTTGCATAAGCTGGCTTGATAAACAACCTGCAGAATCAGTCATTTATGTTGCCTTTGGCAGCACAACATTCTTCAAGCAGAAACAATTCAATGAACTGGCACTGGGAATTGAACTTGTAGGCCGGCCGTTTTTATGGGTTGTCCCTTCAGTTGCTGAATACCCCAATGAGTTCACACAGAGAGTATCCGACCAAGTAGCCAACAGAAGTGAGGGAGTGCAGGAAACAACCATGGGCAGGCGACCTCATGTGCTTGTTGTACCATTCCCAGCACAAGGACATGTTGCCCCTCTTATGAAGTTGGCCCACAAAGTCTCTGATCATGGAATCAAGGTAACTTTTGTTAACACAGAGTTCATACATGCAAAAATTATGGCTTCAATGCCAGACAAGGATGGAAAGCAGAGCCGAATCGAGCTAGTCTCAGTCCCTGATGGATTGAATCCAGAAGCAAACCGAAATGATGCAGTTATGCTGACAGAAAGTATTTTAACGGTCATGCCTGGCCATGTTAAGGACTTGATTGAGAAGATCAACCGAACAAATGATGATGAGAAGATCACATGTGTCATTGCTGATACAACAGTTGGGTGGGCACTTGAGGTTGCTGAGAAGATGGGAATCAAGAGAGCTGCAGTTTGGCCTGGTGGACCAGGAGACTTGGCTTTGGCACTTCATATTCCAAAGCTTATTGAGGCCAGAATCATAGATACTGATGGAGCTCCTATGAAAAATGAGTTGATCCATCTGGCTGAGGATATCCCTGCTTTTAGCATCACTGGTCTTTCGTGGAACTTATCAGATGACCCGAAGATCCGAGATGTTATATTTGGATATGCTTTCAGAGTCAGCCAAACTGTCAAACTTTCAAACTGGCTTCTTTGCAACTCATTTTATGAACTTCACTCATCAGCCTGTAACTTGATTTCTGACATACTACCCATTGGCCCTTTACTTGCAAGTAATCATCCTGCTCATTCTGCTGGAAACTTTTGGGCTGAGGATTCAACTTGCCTAAGGTGGCTTGATAAACAACCTGCTGGCTCAGTCATTTATGTTGCCTTTGGCAGCTTAGCAATCTTAAGCCAGCACCAATTCAATGAACTAGCACTTGGCATTGAACTTGTAGGCCGGCCATTTCTATGGGTGGCCCGATCAGACTTTACTAATGGATCAGCTGTTGAATACCCAGATGGGTTCATGCAGAGAGTTTCTGAGTATGGAAAGATTGTGGAATGGGCAGACCAAGAAAAGGTGTTAGCTCACCCTTCTGTTGCATGTTTCTTATCACATTGTGGATGGAACTCAACCATGGAAGGTGTAAGCATGGGAGTTCCTTTTTTATGCTGGCCCCAGTTTGCAGATCAATTCTGCAACCGGAATTTCATATGCGATATCTGGAAGGTCCATAATTGGTTTTCTTGTTGTAGAAGGATAAAAATGGGTTCATGTAATAGATCCCAATCAACAAATAGACCATCACTTTCATATAATTGGTGTTTTCACTGA 1902 43.38 MGIEGSALWPAGPVTLAMGLHIPKLIEAGIIDSYGNPIKSELIRLSKDIPAFSSTNLSWNSTDDPTIRQISFEYAFRLSQTAKISNWLLCNSFYELDSSSFDLIPNVLTLGPLLASNRPGSSAGNLWPNDPTCISWLDKQPAESVIYVAFGSTTFFKQKQFNELALGIELVGRPFLWVVPSVAEYPNEFTQRVSDQVANRSEGVQETTMGRRPHVLVVPFPAQGHVAPLMKLAHKVSDHGIKVTFVNTEFIHAKIMASMPDKDGKQSRIELVSVPDGLNPEANRNDAVMLTESILTVMPGHVKDLIEKINRTNDDEKITCVIADTTVGWALEVAEKMGIKRAAVWPGGPGDLALALHIPKLIEARIIDTDGAPMKNELIHLAEDIPAFSITGLSWNLSDDPKIRDVIFGYAFRVSQTVKLSNWLLCNSFYELHSSACNLISDILPIGPLLASNHPAHSAGNFWAEDSTCLRWLDKQPAGSVIYVAFGSLAILSQHQFNELALGIELVGRPFLWVARSDFTNGSAVEYPDGFMQRVSEYGKIVEWADQEKVLAHPSVACFLSHCGWNSTMEGVSMGVPFLCWPQFADQFCNRNFICDIWKVHNWFSCCRRIKMGSCNRSQSTNRPSLSYNWCFH* 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7856333 7862567 - Vvi17g636 Vvi17g636 779333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g636 633 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 195 - -
Vvi17g636 633 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 471 594 IPR002213 GO:0008194
Vvi17g636 633 Gene3D Glycogen Phosphorylase B; 214 463 - -
Vvi17g636 633 Gene3D Glycogen Phosphorylase B; 464 600 - -
Vvi17g636 633 PANTHER UDP-GLYCOSYLTRANSFERASE 83A1-LIKE 3 197 - -
Vvi17g636 633 PANTHER UDP-GLYCOSYLTRANSFERASE 83A1-LIKE 211 601 - -
Vvi17g636 633 Gene3D Glycogen Phosphorylase B; 121 196 - -
Vvi17g636 633 Gene3D Glycogen Phosphorylase B; 45 120 - -
Vvi17g636 633 CDD GT1_Gtf-like 213 600 IPR002213 GO:0008194
Vvi17g636 633 PANTHER EG:EG0003.4 PROTEIN-RELATED 3 197 - -
Vvi17g636 633 PANTHER EG:EG0003.4 PROTEIN-RELATED 211 601 - -
Vvi17g636 633 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 210 600 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g636 - - - vvi:100253659 809.675
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002843 0 2 0 0 1 1 1 1 1 2 1 0 1 2 1 1 1 4 0 0 2 2 1 3 4 1 2 1 1 11 48