Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g640 ATGCCTGGCAACGAAGTTGGAGATAGGGTCCACAATTTTTTTGGGCAAGACAACTTGTCTCAGGGCCAGCATCATTCACAGGCTGTAGACGGGAATTGGCCGGGTCTAAATAACAATCTTTGGGTGGGAAACCAGAGACAGATTGGTACACTTCCAACTTCCAATCCCAAGAATTACAGTGTACAACAACCAGCAGATTCTGAGAGAGGACATGGCAGTCAGTCTTCTCGAGTCCCACATGGCTTGAACTTTACACAATCAACTCTGAGGCCTGACATTGTCAAAAATCAGTCTCAGAATCAACAGCTGAATCTGAATGGCTATATGCATGGTCATACTGGTTTTCAGACAAGGCAGAATGAAGCAAACCTTTTGGGAGTGGATACAGAATCTGATCGGCATAGTCTAACATCGAGAGGCTTATCTAGTTTTGAATCACAGCGAGGGAATGGTCCTGAACATCATAGGAAAAATTCAGTAATGATGGAAACTACCGAATCTCCTGTTAATTTTGATTTTCTTGGTGGTCAGCCACAGATGGGTGGCCAGCAATCAGGCATGCTGCAATCTTTGGCAAGGCAGCAATCTGGGTTTAATGACATGCAGATTCTCCAGCAACAAGTGATGCTGAAACAAATGCAAGAACTTCAGAGACAGCAACAAATTCAGCAACAAGAAACAAGGCAACACAATTCCATAAATCAAATTCCCTCCTTTTCTAACCAGGCTCCTGGGAACCATTCACCTGCCATGATTAATGGAGCTCCCATCCATGATGCATCTAATTATTCATGGCACCCTGAGTTTATGTCAGGAAACACAAACTGGATCCAGCGTGGTGCATCACCTGTAATCCAGGGATCCTCTAATGGACTCATTAATTCATTTCCAAGCAATCAATATACTGCATTCCAAGATCAACCTAGCATGCAGGATGGTAATTTGGTTTCTAAGCAGGGTTTTCCAGTGAAAAAATTGTTTGGGCAGGCTCCTGGTCAAAATTTAAGTGGTGGTGTTGTTTTGGAAAATTTGCAGCAATTGAACTCCCAGCAAAGAAATGCACCTTTGCAGGAATTTCATGGAAGGCAAAATCTTGCTGGTTCATCCGAAACATTACAAGAGAAAACAGTGATGCCGGTTGCTCGTGCTCAGAGTTCAGCTGGCCTTGATCCAACTGAAGAAAAGTTTTTGTATGGTACTGATGACAGTATTTGGGATGTCTTTGGCAAGGGCTCCAATATGGGGCTACCGGAAGAGTGGAGTGGGCCGATTTTTCAGAGCATTGAACCTCCAACTGGGAACCCTCAGCCAGCGACATACAGTGATGGAGGCAAAAAGCAAACAGTTTGGGCCGATAACTTGCAGCAATCTGGACTCAAATTTTCAAATGAAGAGAGTGAGAGGTTGCAGATGAATTCTTCTCACAGATCCATACAGCATTCTTCTGAAGAAGGAAGCAACATATCCTCTTACAGCACTGGTGGCCAACCCAGCAATAAACCAAATGGTTGGAATTTTATTGAGTCTGGAGCACCTGGTGGGGATGCTACAATGAGAGCTCATGAAAATGAAAACTTATTGCACCATTCTCAGAGTAATGATCTTAACAGAGCCATGCATGGTTCTGTTGAAATGCATGAGATGGAGAACTGTGATAAAAAAGAGAACTCCAGTGATGGCTATCGCTCTAACTTATCCCATCGTGCTTCCTCTGGTGGTTTGAGAGAAAATGTTTGGTTAGATGCAAGTGACTCACGTTCTTTGCCAGGCGCCAAACAAAAGTTGTCCGGTCAGGTTGGTAGAAAAACCTTGGGGTCTCGCCGATTTCAGTATCATCCAATGGGAAATTTGGAAGTGGATATAGAACCGTCTTATGAAGCAAAACATGTTTCACACGCACAGGCCATGTCTCAGCAGGTTTCCCGGGGATTAAAAAGTCATGAACAAGGATTTTCTGGACCATCTAAATTTTCTGGTCATGTTCCTAAAGATTCGAATGAAATGGAAAAGGGAGACACAAGAGGAGTAGATGAGGTACCTTCTAGAGGCATATTTCCTGGTTCTATGCCTAATATGTCTGCTCCTCCTGACAGATCAGTTGGTATCTATATCCAAAACAAGACTGCTCAATCAAGGTATCAAAATATGCTTGAACTTCTTCACAAGGTGGATCAATCAAGGGATCGAGGCACAGCAGCTCAGTTCAGTTCTTCAGAGCGGAATTCACTATCTGAGATGCCAGAACCAGAAACTTCTGATGGGTCTGTAGGTCACCTTCAGCGAAATCAGTCCTCTGCTTCTCAGGGTTTTGGTTTGCAACTGGCCCCTCCTTCTCAGCGATTGCCTGTTCCAAACCGTTCCTTGGTTTCTCAGAGCTCCTCACAGACAGTTAATTTGCTCAACTCACATACCTCTCCTGAGATAGGAGATAAGAGTCGTGCATGGTTGGCATCCACTGCTTCTGTTCAGTCTTTGCCTCCTTCCCGTGAAGCATCTCAGGGAGATCCGCTTCAGAATCAGCATATGACTGTTGCAAGTGGGCAAGTTACATCTGATCAATCTACCCCTGTGTTGGAGGCTGTGCCTGTTTCACGGCCTTCTTTTTCATCTGGCACATCCCATCAGGATGGTTTTTCAAAGGTACCTAATGTATGGACCAATCAAGTGTCGTCTGAGAACATTGACCCAGTCCAAAAGCCAATGCATGGTTCACAAGGAAAAGAATCTGTTGGTAATCATCTTTCTGCTGCATCTCCTTCAAACCCTGCTGCCACCCAAAGAGATATTGAAGCTTTTGGCCGTTCTTTGAAACCAAATAATAGTTTGAATCAGAATTTCTCATTGTTGCATCAGATGCATGCCATGAAGGGTACTGAGATTGATCCTGTTAATCATACCTCAGATATGCTTGTGTTTGGACGAAATGATTCTCAAAATTACTCCAGTGGTAATAATTCAGTTTCTTCTAGAGCCGAGCATTCTCAGATTAGTCCCCAGATGGCACCTTCCTGGTTTGATCAATATGGGACCTTTAAAAATGGGCAGATGTTCCCTATGTATGATGCGCATAAAACCACCACTATGAGGACTGTGGAGCAGCCATTTTTTGTTGGTAAATCTTCTGATAGTTTGCACACACGGAATTCAATGGACCAAGTAAATGGTGCTTTTGATACCAGTCAGGTTGCTAATGTCCAGCATAGTTCTACCCCCATCTCAATGGCAAGTGATCATCTCTCTGCCCCTCTTTCATTGCCTCCAAATGTCACTGATCAAAGTTTGGTGGTTGTGAGGCCAAAGAAGCGTAAGAGTGCTACATGTGAGCTTCTGCCATGGCATAAAGAGGTGACTCAGTTCCGTAGGCTTCAGAGGAACAGCATGGCAGAACTAGACTGGGCTCAAGCAACAAATCGATTGATTGATAGGGTGGAAGATGAAGCTGAAATTTTTGAAGATGGTTTTCCATTTCTTAGACCGAAGAGAAGGCTTATTTTGACAACACAGCTTATGCAGCAATTGCTTCGCCCTCCTCCAGCTGCAATTCTCTCAGTGGATGCCAGTTCAAATTGTGAGAGTGTGGTCTACTCTGTTGCTAGATTAACATTAGGGGATGTGTGCAGCTTTCTGTCTGTCTCAGGAAGTGATTCGTCTATGTCTCTGGAGAGTGGAAACCTCCTGGCTGAGAAGCACAAGACATCTGAGAAAATTGGTGATCAGTACTTCACAAAAGTAATGGAAGACTTCATTAGTAGAGCAAGAAAGCTGGAAAATGATTTGTTCAGATTGGACAATAGAGCCTCAGTCTTGGACTTGAGAGTGGATTGCCAAGATCTAGAGAAGTTTTCTGTCATCAACCGTTTTGCTAAGTTCCATAGCCGGGGGCAAGCTGACGGGCCTGAGACCTCGTCCTCCTCTGATGCAACTGCAAATGCTCAGAAAACCTGCCCTCAGAGATATGTCACCGCACTCCCAATGCCTAGGAATCTCCCTGACAGGGTACAATGTCTTTCACTTTGA 4017 44.24 MPGNEVGDRVHNFFGQDNLSQGQHHSQAVDGNWPGLNNNLWVGNQRQIGTLPTSNPKNYSVQQPADSERGHGSQSSRVPHGLNFTQSTLRPDIVKNQSQNQQLNLNGYMHGHTGFQTRQNEANLLGVDTESDRHSLTSRGLSSFESQRGNGPEHHRKNSVMMETTESPVNFDFLGGQPQMGGQQSGMLQSLARQQSGFNDMQILQQQVMLKQMQELQRQQQIQQQETRQHNSINQIPSFSNQAPGNHSPAMINGAPIHDASNYSWHPEFMSGNTNWIQRGASPVIQGSSNGLINSFPSNQYTAFQDQPSMQDGNLVSKQGFPVKKLFGQAPGQNLSGGVVLENLQQLNSQQRNAPLQEFHGRQNLAGSSETLQEKTVMPVARAQSSAGLDPTEEKFLYGTDDSIWDVFGKGSNMGLPEEWSGPIFQSIEPPTGNPQPATYSDGGKKQTVWADNLQQSGLKFSNEESERLQMNSSHRSIQHSSEEGSNISSYSTGGQPSNKPNGWNFIESGAPGGDATMRAHENENLLHHSQSNDLNRAMHGSVEMHEMENCDKKENSSDGYRSNLSHRASSGGLRENVWLDASDSRSLPGAKQKLSGQVGRKTLGSRRFQYHPMGNLEVDIEPSYEAKHVSHAQAMSQQVSRGLKSHEQGFSGPSKFSGHVPKDSNEMEKGDTRGVDEVPSRGIFPGSMPNMSAPPDRSVGIYIQNKTAQSRYQNMLELLHKVDQSRDRGTAAQFSSSERNSLSEMPEPETSDGSVGHLQRNQSSASQGFGLQLAPPSQRLPVPNRSLVSQSSSQTVNLLNSHTSPEIGDKSRAWLASTASVQSLPPSREASQGDPLQNQHMTVASGQVTSDQSTPVLEAVPVSRPSFSSGTSHQDGFSKVPNVWTNQVSSENIDPVQKPMHGSQGKESVGNHLSAASPSNPAATQRDIEAFGRSLKPNNSLNQNFSLLHQMHAMKGTEIDPVNHTSDMLVFGRNDSQNYSSGNNSVSSRAEHSQISPQMAPSWFDQYGTFKNGQMFPMYDAHKTTTMRTVEQPFFVGKSSDSLHTRNSMDQVNGAFDTSQVANVQHSSTPISMASDHLSAPLSLPPNVTDQSLVVVRPKKRKSATCELLPWHKEVTQFRRLQRNSMAELDWAQATNRLIDRVEDEAEIFEDGFPFLRPKRRLILTTQLMQQLLRPPPAAILSVDASSNCESVVYSVARLTLGDVCSFLSVSGSDSSMSLESGNLLAEKHKTSEKIGDQYFTKVMEDFISRARKLENDLFRLDNRASVLDLRVDCQDLEKFSVINRFAKFHSRGQADGPETSSSSDATANAQKTCPQRYVTALPMPRNLPDRVQCLSL* 1339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7936597 7945392 - Vvi17g640 Vvi17g640 779337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g640 1338 MobiDBLite consensus disorder prediction 783 808 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 646 696 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 412 541 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 542 841 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 966 1338 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 887 966 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 1 293 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 294 415 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 14 32 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 542 841 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 412 541 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 887 966 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 294 415 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 1 293 - -
Vvi17g640 1338 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEIN 966 1338 - -
Vvi17g640 1338 Coils Coil 1245 1265 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 662 677 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 724 808 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 908 925 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 427 445 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 130 156 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 462 504 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 418 445 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 552 572 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 894 925 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 47 84 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 1 32 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 729 774 - -
Vvi17g640 1338 MobiDBLite consensus disorder prediction 818 837 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g640 - - - han:110941902 720.694
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1040 Vvi17g640 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g640 Blo04g00787 Blo16g00173 . . . Bpe13g00307 Bma06g00157 . Cmo13g01131 . . . . . . Cpe20g00066 . . . . . . . . . . . . . . . Cone2ag0816 Cone16ag0198 Cone13ag0041 Cone19ag0047 Lsi02g00108 Csa01g00588 Chy12g01510 Cme12g01954 . . Bda11g01717 Bda14g00869 . Bpe15g00586 Bma03g00846 . Sed08g2109 . . Cma13g01082 . Car13g00920 . . . Bhi08g01103 Tan05g2375 Cmetu12g1694 Lac10g0137 . . . Cla04g01165 Cam04g1224 Cec01g1735 Cco01g1781 Clacu04g1251 Cmu04g1229 Cre01g1525 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003705 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 1 46