Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g643 ATGAATCCAGAGAAATTCACCCACAAGACAAATGAGACTCTTGCTGGGGCTCATGAGCTTGCTATGAACTCTGGCCATGCTCAGCTCACACCACTTCACGTTGCTGTGGCTTTGATAACTGATCCCAATGGCATCCTCCGGCAAGCCATAATCGGTGCTGGTGGAAATGAGGAGGCTGCCAACTCTGTTGAAAGAGTCTTCAATAAAGCTCTGAAGAAACTCCCATCTCAGACCCAATCTTCACAAAAGTCACGGGGTGACACCCATTTAGCAGTTGATCAATTGATTCTTGGCCTTCTTGAGGATTCCCAAATTGGTGATTTGCTTAAAGAAGCCGGGGTTAGTACTTCTAGAGTGAAATCTGAGGTTGAGAAGCTTCGAGGGAAAGAAGGTAAGAAGGCATTGAAGACTTATGGGCGTGACCTTGTTGAGCAAGCTGGAAAGCTTGATCCTGTCATTGGCCGGGACGAAGAGATTCGGAGGGTCATCAGGATTCTTTCAAGGAGGACCAAGAACAACCCTGTTCTTATTGGAGAACCAGGTGTGGGTAAGACTGCTGTTGTTGAAGGATTAGCTCAGAGAATTGTAAGAGGGGACGTTCCCAGTAATCTCGCTGAAGTGAGGCTTATAGCATTGGATATGGGTGCTTTGGTTGCTGGGGCAAAATATAGAGGAGAATTCGAGGAGAGGTTGAAATCTGTTTTGAAAGAAGTGGAAGAGGCAGAAGGGAAAGTGATTTTATTCATTGATGAAATTCACCTTGTTCTTGGTGCTGGTCGGACTGAAGGATCTATGGATGCTGCTAACTTGTTTAAGCCCATGCTTGCCAGAGGTCAGCTACGCTGCATCGGAGCAACGACCCTTGAGGAATACAGAAAGTATGTTGAGAAAGATGCCGCTTTTGAGAGGCGGTTCCAGCAAGTTTATGTAGCTGAGCCCAGCGTCCCTGACACAATAAGCATTCTTCGAGGGCTAAAAGAAAGGTATGAAGGGCATCATGGTGTTCGAATTCAGGACCGAGCTCTTGTAGTTGCAGCCCAACTATCAAGCCGATACATCACTGGCCGACATCTGCCAGACAAGGCAATCGACCTGGTTGATGAAGCTTGCGCCAATGTGAGAGTTCAACTTGATAGCCAGCCCGAAGAAATCGACAATTTGGAAAGGAAGAGAATGCAATTAGAAGTTGAACTTCATGCTCTTGAAAAGGAGAAGGACAAAGCCAGTAAAGCTCGTCTTGTTGAAGTCCGCAGAGAGCTTGACGACTTGAGGGACAAGCTTCAACCCTTGATGATGAAGTACAAAAAGGAGAAAGAAAGGATTGATGAGCTTCGCAGGCTAAAACAGAAAAGAGAGGAGCTCTTGTTTGCTTTACAAGAGGCTGAAAGAAGATATGATTTAGCCAGAGCTGCTGATTTGCGATATGGGGCAATTCAAGAAGTGGAGGCTGCTATAGCAAACCTTGAAGGAACCACTGATGAGAACATGATGTTAACGGAGACTGTTGGGCCTGAGCAGATTGCTGAGGTGGTGAGCCGCTGGACTGGCATCCCTGTCACTAGGCTTGGACAAAATGATAAAGAAAGGTTAATTGGGCTTGCGGAGAGGCTGCATCAGAGAGTGGTGGGACAGGATCAGGCAGTCAGTGCTGTGGCAGAGGCTGTCTTGAGATCGAGGGCTGGGTTAGGAAGGCCACAACAACCCACTGGTTCGTTCCTCTTCTTGGGTCCAACTGGTGTTGGTAAGACTGAGCTTGCCAAGGCCCTGGCTGAACAGCTCTTTGATGATGAAAATCTTTTGGTGAGAATTGACATGTCCGAGTATATGGAGCAGCATTCAGTTTCAAGATTGATTGGGGCTCCTCCTGGATATGTTGGACATGATGAAGGTGGGCAACTCACAGAGGCAGTAAGAAGGAGGCCTTATAGTGTTGTACTGTTCGATGAAGTAGAGAAAGCACATATCGCCGTATTCAATACCCTCCTCCAGGTTTTAGACGATGGAAGGTTAACTGATGGCCAAGGCCGCACTGTAGACTTCACAAACACAGTGATCATCATGACTTCAAACCTTGGAGCTGAGCATCTCCTCTCGGGTTTAGTAGGCAAGTGTACAATGCAAGATGCTCGTGACCGGGTGATGCAGGAGGTGAGAAGGCACTTCAGGCCAGAGTTGCTTAACCGGCTGGATGAAATTGTGGTATTTGATCCCCTCTCACATGATCAACTGAGAAAGGTTGCCAGGCTACAAATGAAGGACGTTGCAAGCCGCTTGGCAGAGAGGGGCATTGCTCTGGCTGTGACTGATGCAGCATTGGATGTTGTTCTAGCAGAGAGTTATGATCCGGTTTACGGTGCAAGACCCATTAGGAGATGGCTGGAGAAGAAGGTGGTGACTGAGCTATCAAAGATGCTCATAAGGGAGGAGATCGATGAAAACTCAACTGTTTATATAGATGCGGGAGTGTCAGGAAAGGGGTTGGCGTACCGAGTAGAAAACAATGGGGGGCTGGTGAATGCATCCACCGGACAAAAGTCAGACGTGTTGATTCGGATCCCAAACGGGCCAAGAAGCGATGCTGCCCAAGCGGTGAAGAAGATGAAGATCGAAGAAATAGAAGACGAAGAGGATGAGATGGATCTATAA 2646 47.58 MNPEKFTHKTNETLAGAHELAMNSGHAQLTPLHVAVALITDPNGILRQAIIGAGGNEEAANSVERVFNKALKKLPSQTQSSQKSRGDTHLAVDQLILGLLEDSQIGDLLKEAGVSTSRVKSEVEKLRGKEGKKALKTYGRDLVEQAGKLDPVIGRDEEIRRVIRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLAEVRLIALDMGALVAGAKYRGEFEERLKSVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLMMKYKKEKERIDELRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIANLEGTTDENMMLTETVGPEQIAEVVSRWTGIPVTRLGQNDKERLIGLAERLHQRVVGQDQAVSAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHDEGGQLTEAVRRRPYSVVLFDEVEKAHIAVFNTLLQVLDDGRLTDGQGRTVDFTNTVIIMTSNLGAEHLLSGLVGKCTMQDARDRVMQEVRRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAERGIALAVTDAALDVVLAESYDPVYGARPIRRWLEKKVVTELSKMLIREEIDENSTVYIDAGVSGKGLAYRVENNGGLVNASTGQKSDVLIRIPNGPRSDAAQAVKKMKIEEIEDEEDEMDL* 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7994140 7998739 + Vvi17g643 Vvi17g643 779340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g643 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 818 IPR027417 -
Vvi17g643 881 SMART ClpB_D2_small_2 738 829 IPR019489 -
Vvi17g643 881 Gene3D - 3 125 IPR036628 -
Vvi17g643 881 Gene3D - 738 833 - -
Vvi17g643 881 Pfam AAA domain (Cdc48 subfamily) 568 732 IPR003959 GO:0005524|GO:0016887
Vvi17g643 881 Pfam AAA lid domain 315 414 IPR041546 -
Vvi17g643 881 PANTHER ATP-DEPENDENT CLP PROTEASE 4 832 - -
Vvi17g643 881 Coils Coil 377 471 - -
Vvi17g643 881 Gene3D - 126 314 IPR027417 -
Vvi17g643 881 CDD AAA 542 737 - -
Vvi17g643 881 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 572 590 IPR001270 GO:0005524
Vvi17g643 881 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 617 635 IPR001270 GO:0005524
Vvi17g643 881 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Vvi17g643 881 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 679 693 IPR001270 GO:0005524
Vvi17g643 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 516 IPR027417 -
Vvi17g643 881 CDD AAA 153 308 - -
Vvi17g643 881 SUPERFAMILY Double Clp-N motif 4 124 IPR036628 -
Vvi17g643 881 Pfam C-terminal, D2-small domain, of ClpB protein 738 818 IPR019489 -
Vvi17g643 881 ProSiteProfiles Clp repeat (R) domain profile. 3 129 IPR004176 -
Vvi17g643 881 Gene3D - 315 515 IPR027417 -
Vvi17g643 881 ProSitePatterns Chaperonins clpA/B signature 2. 602 620 IPR028299 -
Vvi17g643 881 Gene3D - 521 737 IPR027417 -
Vvi17g643 881 Coils Coil 224 244 - -
Vvi17g643 881 ProSitePatterns Chaperonins clpA/B signature 1. 266 278 IPR018368 GO:0005524
Vvi17g643 881 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 832 - -
Vvi17g643 881 Pfam Clp amino terminal domain, pathogenicity island component 17 61 IPR004176 -
Vvi17g643 881 Pfam Clp amino terminal domain, pathogenicity island component 79 128 IPR004176 -
Vvi17g643 881 SMART AAA_5 170 315 IPR003593 -
Vvi17g643 881 SMART AAA_5 568 739 IPR003593 -
Vvi17g643 881 Pfam ATPase family associated with various cellular activities (AAA) 175 288 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g643 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - vvi:100232966 1599.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63