Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g65 ATGAATGGAATATTTAATGAGCAGATTTTGGTTGAGAAGCTAGCCAAACTCAATAGCTCACAAAAGAGCATAGAGACTTTATCACACTGGTGCATTTTCCATAGGAAGAGAGCAAAACAAGTTGTTGAAACATGGGAAAGACAGTTCCATTGCTCCCTGAGGGAGCAGCGACTCTCCTTTCTATATCTTGCAAATGATATTTTGCAGAATAGTAGGCGAAATGGTTTGGAGTTTGTTGGTGAATTTTGGAAGGTTCTTCCAAATGCTCTTCGTGATGTAGTAGAAAGTGGAGATGATTTTGGGAAAAATGCTGTGCTGCGACTGATTAATATATGGGATGAGAGAAAGGTATTCGGTTCTAGGGGGCAAATTCTCAAAGAAGAGCTCATGGGGAAGACTGTGGAGAATAATGATAAAAATAATAATAACAATTCATATAGCAAGAACTTGAGCTTTAGACATGTGACTGCAGTGGAAAAAATCATTTCAAGTTATGAAAATGTATATGGTAGTCCATTGGATGAAGAAACTCTATTGAGCAAATGCAGGAGCGCTATTGGTTGCATTGAGAAAGCAGAGAAGGAGATTGGTGGTGATTACAGCTCAGGGCAATTCAATGGATCTAAATATGTTGAGGAGTTGCAAGGGCAGCATGACATACTGACAGAATGTATCGAGCAACTGAGAACAGCTGAATCATCAAGAGCAAGTCTCGTGTCTCATTTGAAGGAGGCTCTCCAAGAGCAGGAATTCAAGCTGGATCAAGTTCACAATCAACTTCAGGTTGCCGAGTCACAATCAGCACATATAAGCAGCATTCGGCAACAATTGCTGAACTGCAACAGAGGTCATATGACAGCAGAGCAGAGGGATGTTAACGCTCATGCTGAGGCACCTTCCACTTTCACTCCAGAAACTCCAGCCACTGGTGGAGACAAGGAACAATCAGCTCCGGTAATGTACACAAGGGAGGAATCTTTCACTGGTAAGTCTTCTTCCCGCTTTGAAGAAGATCCACGGAAATCTGCAGCTGCTGCTGTGGCAGCAAAGCTTGCAGCTTCAACCTCCTCGGCCCAAATGCTATCCTATGTGTTCTCCTCTCTGGCGTCAGAATCGGCGGATGGAAATCCAAAGGAAGAATCTCCTGATGCTCTTCCTTTTGAGAAAAGGCCAAAACTTGAAAACCTTCCTTTTTCCTACTTCCCACCTCAGCATTCCCAACAACCACCACTTCCCCCTTTTCCCCATCCTGATTCGCTCCAAAACAAGGCGACAGCTACCTCGCAAATGCCTCCGCAGCAGCCACCTCCCCAACTGTCCCCTCAGGTGTCACATCCAGATCTGGCCATGCATCAGGCAGCACCACCTCCGCTACCAACTCTCCCACAGCTAGCCACGCCACCATTTATGCAGACAGCTGGATCTATGATAGGTGCACCGTACAACTATACACCACCACTGCCTCCACCTCCTGGCTTTTCAATACCTAGAACCCCACTAACTGCTGTCCCTTATCCTTCTCCGCCGATTCCATACCAGAATTTTCAGGGGCCAGAAGGTTTCTTCAGTCAGCCGCCCATACCAGCAACACCTCCAATTTCGAGGTCCTAG 1611 45.81 MNGIFNEQILVEKLAKLNSSQKSIETLSHWCIFHRKRAKQVVETWERQFHCSLREQRLSFLYLANDILQNSRRNGLEFVGEFWKVLPNALRDVVESGDDFGKNAVLRLINIWDERKVFGSRGQILKEELMGKTVENNDKNNNNNSYSKNLSFRHVTAVEKIISSYENVYGSPLDEETLLSKCRSAIGCIEKAEKEIGGDYSSGQFNGSKYVEELQGQHDILTECIEQLRTAESSRASLVSHLKEALQEQEFKLDQVHNQLQVAESQSAHISSIRQQLLNCNRGHMTAEQRDVNAHAEAPSTFTPETPATGGDKEQSAPVMYTREESFTGKSSSRFEEDPRKSAAAAVAAKLAASTSSAQMLSYVFSSLASESADGNPKEESPDALPFEKRPKLENLPFSYFPPQHSQQPPLPPFPHPDSLQNKATATSQMPPQQPPPQLSPQVSHPDLAMHQAAPPPLPTLPQLATPPFMQTAGSMIGAPYNYTPPLPPPPGFSIPRTPLTAVPYPSPPIPYQNFQGPEGFFSQPPIPATPPISRS* 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 568126 580106 + Vvi17g65 Vvi17g65 778762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g65 536 MobiDBLite consensus disorder prediction 403 417 - -
Vvi17g65 536 MobiDBLite consensus disorder prediction 507 536 - -
Vvi17g65 536 MobiDBLite consensus disorder prediction 294 337 - -
Vvi17g65 536 Gene3D - 3 131 IPR008942 -
Vvi17g65 536 Coils Coil 211 231 - -
Vvi17g65 536 CDD CID_RPRD_like 7 130 - -
Vvi17g65 536 ProSiteProfiles CID domain profile. 2 134 IPR006569 -
Vvi17g65 536 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 535 - -
Vvi17g65 536 Pfam CID domain 9 120 IPR006569 -
Vvi17g65 536 SUPERFAMILY ENTH/VHS domain 11 117 IPR008942 -
Vvi17g65 536 SMART 558neu5 9 130 IPR006569 -
Vvi17g65 536 Coils Coil 239 266 - -
Vvi17g65 536 PANTHER OS01G0925000 PROTEIN 1 535 - -
Vvi17g65 536 MobiDBLite consensus disorder prediction 394 466 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g65 K15559 RTT103; regulator of Ty1 transposition protein 103 - vvi:100250806 966.837
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1134 Vvi17g65 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g65 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003235 2 1 1 3 2 2 2 2 2 1 1 1 2 1 1 2 1 2 2 2 1 1 1 3 1 2 1 3 1 2 49