Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g653 ATGGCTGGGGCTTTTGGGGAAGGAATGATGCATCCAATTGATACTGTGAAGACCCGAATTCAAAGTCAAGCTATTTTAAGGGGAGGCCAGAACCAAAAAACTATAATTCAGATGGTGCATACAATCTGGGCTGCTGATGGGTTGAGAGGATTTTATAGAGGTATAACTCCTGGGCTAACCGGTTCTCTTGCAACCGGAGCAACATATTTTGGTGTCATCGAGTCCACCAAAAAATGGATTGAAGAATCACATCCCAGCCTTGAGGGCCACTGGGCCCATTTCATTGCTGGAAGTGTTGGAGACACACTAGGCTCTTTTGTATATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGTCCAAGGCACAAAGACAACTTGGAGTTCAGTTATCATAAATGGTACTGCCCGTACAAGACCTGGTCCACAAATGTATGGTTATTATGCAGGAATGTTTCAGGCTGGCTGTTCAATATGGAAGGAGCAGGGCCTAAAAGGATTATATGCAGGATACTGGTCTACGCTTGCCAGGGATGTGCCATTTTCTGGGCTCATGGTAACTTCTTATGAAGCTCTAAAAGATTTAGCAGAGCATGGGAAGCAAAAATGGATACCCAATTCAGATTATAATGTGAATAGTTCTGTTGAGGGACTCGTGTTGGGAGGATTAGCTGGTGGTTTTAGTGCATATCTAACCACTCCTTTGGATGTCATCAAGACAAGATTGCAAGTGCAGGGATCGAATTCAAGCTACAATGGCTGGTTGGACGCAATTCACAGGATATGGATGACCGAAGGTGTCAAAGGAATGTTCAGAGGGAGCATTCCCAGGATTGTATGGTATATTCCAGCCTCTGCTCTTACATTCATGGCCGTGGAGTTCCTTAGAGACCATTTCAATGGAGGACTCAACAACAATAGTATGCAGGAAGTTTCAAGCTTGTCTATAGACAAAAAGGGATCTTCTCTACAAGAGGTGGCTTAG 984 44.31 MAGAFGEGMMHPIDTVKTRIQSQAILRGGQNQKTIIQMVHTIWAADGLRGFYRGITPGLTGSLATGATYFGVIESTKKWIEESHPSLEGHWAHFIAGSVGDTLGSFVYVPCEVMKQRMQVQGTKTTWSSVIINGTARTRPGPQMYGYYAGMFQAGCSIWKEQGLKGLYAGYWSTLARDVPFSGLMVTSYEALKDLAEHGKQKWIPNSDYNVNSSVEGLVLGGLAGGFSAYLTTPLDVIKTRLQVQGSNSSYNGWLDAIHRIWMTEGVKGMFRGSIPRIVWYIPASALTFMAVEFLRDHFNGGLNNNSMQEVSSLSIDKKGSSLQEVA* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8158121 8165201 - Vvi17g653 Vvi17g653 779350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g653 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 79 IPR018108 -
Vvi17g653 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
Vvi17g653 327 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 321 - -
Vvi17g653 327 Pfam Mitochondrial carrier protein 90 196 IPR018108 -
Vvi17g653 327 Pfam Mitochondrial carrier protein 215 300 IPR018108 -
Vvi17g653 327 Pfam Mitochondrial carrier protein 1 82 IPR018108 -
Vvi17g653 327 SUPERFAMILY Mitochondrial carrier 2 295 IPR023395 -
Vvi17g653 327 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 321 - -
Vvi17g653 327 Gene3D Mitochondrial carrier domain 1 133 IPR023395 -
Vvi17g653 327 Gene3D Mitochondrial carrier domain 134 316 IPR023395 -
Vvi17g653 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 88 195 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g653 - - - vvi:100255234 661.759
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33