Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g667 ATGGCGAAATCCATTACCCCAAATGGCATTTCCACTATTCTCTCAAACCCATCTCCGGATTCTTCCACAGAACTCCCAGAAATCATCGTTCAAGTCATAGATCTCACGCCAATCGGAAACAGATATAAATTTACAGCAAATGACGGAAAGATGAAGCTCAAAGCAATGTTTCCATCCAGTTTTTCATCTGAGATAAACTCTGGAAATATTCAAAACCTTGGTCTCATTCAAGTTATTGATTACACCCTCAATGACATTCCGAGCAAGCAAGAGAAATATTTGATTGTGACAAAATGTGAGGCTGTCTCTCCTGCACTTGAAGTGGAATTCAAGACTGAGGTGAAAAGAACTGGCATATTTTTGAAGCCAAAGCAAGAAATAGTTGCTAAATCAGCTGCTCAGATAGTAAATGAACAGCATGGAAATATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACAAACAAAGGAACCATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGATGGTACACAAATCCAAGCAACAATGTTTAACGAAGCTGCAAGGAAGTTCTATGAAAAGTTCCAACTGGGGAAGGTCTATTACATATCAAAAGGAGCTCTAAAAGTAGCCAACAAGCAGTTTAAAACTGTACAAAATGATTATGAAATGACCCTGAATGAAAATTCAGAGGTTGAGGAGGCCAGTAATGAAGAAACTTTTATCCCTGAAGCAAAATTCAAATTTGTTGAGATTGAAGAGTTGGGTCCTTATGTCAATGGGAAGGAGCTTGTAGATGTTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAAGACGAAGAAGACTGTTGTGGTCTCTTTGTGGAATGATCATGCTACTAATGTAGGGCAGGAATTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTTAAAGTTGGAGACTTCCAAGGTGTATCACTATCAACATTGAGTAAGAGTATTGTACTGGTAAATCCAGATACACCTGAATCAAAAAAGTTGAGATCCTGGTATGATTCTGAAGGTAAAGGAGCTTCAATGGCTTCTATTGGGTCTGATATCAGTCCTTCATCTAAGGGTGGAGTCAAGTCCATGTACTATGACAGGGTTTCCCTTTCTCATGTAACCAGCAACCCATCTTTGGGTGAAGACAAGCCTTCCTTTTTTAGCATCAGGGCATACATAAGCTTCATCAAGCCTGATCAAACAATGTGGTACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGGTACATAATGGTAGTGAAAGTTTCAGATGCTAGTGGTGAAGCTTGGCTTTCTCTGTTCAATGAACAAGCAGAGAGAATGTTTGGGTGCTCTGCTGATGAGCTTGATAAGCTGAAATCACAGGAGGGAGAAGAGAACCTATTCCAACAGAAATTGAAGGAAGCTATTTGGGTCCCTCATCTTTTCCGGATTAGTGTTGCACAGCATGAGTACATGAATGAGAAAAGGCAGAGGATAACAGCCAGGGCTGTTGTTCCAGTTGATTTTGCAGCTGAATCCAGATTATTGTTGGAGGAGATATCAAAGATGAAGACTTCACAATAG 1809 40.24 MAKSITPNGISTILSNPSPDSSTELPEIIVQVIDLTPIGNRYKFTANDGKMKLKAMFPSSFSSEINSGNIQNLGLIQVIDYTLNDIPSKQEKYLIVTKCEAVSPALEVEFKTEVKRTGIFLKPKQEIVAKSAAQIVNEQHGNMAPAARMAMTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFKFVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVKSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKTSQ* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8383024 8387816 + Vvi17g667 Vvi17g667 779364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g667 602 PANTHER REPLICATION FACTOR A 1, RFA1 5 596 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi17g667 602 Pfam Replication factor-A C terminal domain 445 591 IPR013955 -
Vvi17g667 602 Gene3D - 409 598 IPR012340 -
Vvi17g667 602 SUPERFAMILY Nucleic acid-binding proteins 273 400 IPR012340 -
Vvi17g667 602 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Vvi17g667 602 Pfam Replication protein A OB domain 286 382 IPR031657 -
Vvi17g667 602 CDD RPA1_DBD_C 433 597 IPR013955 -
Vvi17g667 602 CDD RPA1_DBD_A 157 260 - -
Vvi17g667 602 Pfam OB-fold nucleic acid binding domain 168 254 IPR004365 GO:0003676
Vvi17g667 602 Gene3D - 152 261 IPR012340 -
Vvi17g667 602 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi17g667 602 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 596 - -
Vvi17g667 602 SUPERFAMILY Nucleic acid-binding proteins 155 266 IPR012340 -
Vvi17g667 602 Gene3D - 268 408 IPR012340 -
Vvi17g667 602 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 121 597 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi17g667 602 CDD RPA1_DBD_B 290 396 - -
Vvi17g667 602 Gene3D - 4 112 IPR012340 -
Vvi17g667 602 SUPERFAMILY Nucleic acid-binding proteins 423 598 IPR012340 -
Vvi17g667 602 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g667 K07466 - vvi:100255412 1162.9