Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g669 ATGTCCTCTCACATCACCAAACCTCCGTTCTCCTCCATTGTTAAGCCGCTCGCTGAAACTCTATTCACTGAGCAGGATCACAACGCGCAGATCGGCGCCTCGTTGTGCCTCGCTTCGGCGATCGACGCTGCGCCGGATCCGGATCCTGCACTGTTGCGAAGGCTGTTGCCGAGGATCGAGAAGCTCCTGAAGTGTGATAGCTTCAAAGCGAAGCCGGCGGTTTTGACTCTAATTGGAAGCATTGTCGAAGCCGGTGGTGCGACGAGTTACAATGTGGTGAAGAATTTGGTGCCTTGTGCGGTGGGATTTTTGAGCAGTGAGGACTGGGCGGCAAGGAAGGCGGCGGCAGAGGTTCTTGTGAAGCTGGCTGTGATGGAGAGAGATATGTTGTCGGAGTTCAAGTCTTCTTGTCTGAAGACATTTGAGGCTCGAAGATTCGACAAGGTGAAGGCTGTGAGAGATACTATGAATCAGATGTTGGGAGCTTGGAAGGAGATTCCTGATGTTTCCAATGATGTCTCGCCACCGCCGCAATCACAATCATCTTCCAAAGAGAATGCAAGTGATGGGCGCTACCCACTTGAGTCCAGAAATTCTTGCACTGGTGGCTCTGAAGTGCCTCTGATGAGGAAGAAATCCATTCCAACCAGTATATCGCCTCAGCTCAATAGTTCATCTGCAACCACTGTGAGGAGGAGAGGTCCTGTAGATAAATCAGGTTCAGCAATGTTCCGGAAGCTGGAGCGTAAGAAGGCTTCTGATTTGAAAGTGGAAGTTACTGCTCCTCATGCTCCCTCTGTCATGAGGATTCATGAGGATGGCCTTAAGAAGAAAGATGAGAAAGCTCCAGAAAGAGGGGAGAATGAGAAAAATAGGTTCACAAAGCCAGAAACAAGGCGAGTCCTCTTCACTAAGAATTCAGATGACAAGATGAATAAGTTTGGTGGATTCAGGTCCGGATCTCGTGTGGTTCCATGTCAAGAGGAGAATTCTGAGACTACTGTTGAAGTGAGTAACACAACTGAGGTTCCGCATAGAAACCATAAAGAGTGTGAGGATCTATCTCTGATCCGTAAGCAGCTTGTTCAGATTGAAAACCAGCAATCCAGTCTGCTAAATCTCCTCGAGAAATTCATGGGAAGCTCCCAGAATGGATTGAGATCCCTGGAGACACGTGTTCATGGCCTAGAGCTCGCATTGGACGAGATCTCATTTGACTTGGCTGTGTCAAACAGAAGGATGTCAAGCACAGACACTGCAGGAGCCACATGCTGCATGCTACCTGGTGCTGATTTTCTGAGCTCCAAGTTTTGGAGGAAAACAGAAGGCCGGGGATCAACATCAAGGTTTTCTCCTTCTCATGCCACTCAATCAGGCACTGCCATGCGCTACATAGCTGGAAAGAATGACAATGCTGGAACATTCAAGTCGGAGAACCTAAGGTTTCGGCTCCAGGGTGGTGGTGGATTTGTTGTGAATCCATTGGCCGAGATTCCCAGTGATTCAAGGGATATTTCAGAAGTCTCGTCAAATAGAATTTCAAAGAATGCTCACGAGACTGCCTAG 1566 48.6 MSSHITKPPFSSIVKPLAETLFTEQDHNAQIGASLCLASAIDAAPDPDPALLRRLLPRIEKLLKCDSFKAKPAVLTLIGSIVEAGGATSYNVVKNLVPCAVGFLSSEDWAARKAAAEVLVKLAVMERDMLSEFKSSCLKTFEARRFDKVKAVRDTMNQMLGAWKEIPDVSNDVSPPPQSQSSSKENASDGRYPLESRNSCTGGSEVPLMRKKSIPTSISPQLNSSSATTVRRRGPVDKSGSAMFRKLERKKASDLKVEVTAPHAPSVMRIHEDGLKKKDEKAPERGENEKNRFTKPETRRVLFTKNSDDKMNKFGGFRSGSRVVPCQEENSETTVEVSNTTEVPHRNHKECEDLSLIRKQLVQIENQQSSLLNLLEKFMGSSQNGLRSLETRVHGLELALDEISFDLAVSNRRMSSTDTAGATCCMLPGADFLSSKFWRKTEGRGSTSRFSPSHATQSGTAMRYIAGKNDNAGTFKSENLRFRLQGGGGFVVNPLAEIPSDSRDISEVSSNRISKNAHETA* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8408075 8412077 + Vvi17g669 Vvi17g669 779366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g669 521 MobiDBLite consensus disorder prediction 166 242 - -
Vvi17g669 521 MobiDBLite consensus disorder prediction 214 232 - -
Vvi17g669 521 MobiDBLite consensus disorder prediction 501 521 - -
Vvi17g669 521 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 1 510 IPR033337 GO:0005874|GO:0008017
Vvi17g669 521 MobiDBLite consensus disorder prediction 503 521 - -
Vvi17g669 521 MobiDBLite consensus disorder prediction 172 203 - -
Vvi17g669 521 Gene3D - 1 278 IPR011989 -
Vvi17g669 521 SUPERFAMILY ARM repeat 3 386 IPR016024 -
Vvi17g669 521 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 1 510 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g669 - - - vvi:100263859 956.822
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g2 Vvi17g669 ECH
Vvi1g803 Vvi17g669 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g669 . . . . . . . . . . Cma10g00157 . . Car11g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00169 Cmo11g00126 . . . . . . . . . . . . . . . . . . . . . Csa01g00189 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005976 1 1 1 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38