Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g671 ATGCGGCATGAGGGTATACAAGCTGATATTGTTACTTATAATACTCTGCTTAGTGCTTGTGCTCGAAGGGGTCTTGGGGACGAGGCAGAGATGGTGTTTAGAACAATGAATGAGGGCGGGATTCTTCCTGACATTACAACTTATAGTTATCTTGTTGAGACTTTTGGAAAATTGAATAGGCTTGAGAAGGTTTCAGAGCTTCTTAAAGAAATGGAGTCTGGAGGGAGTTTTCCAGACATAACTTCTTACAATGTCTTATTAGAGGCTCATGCACAATCAGGGTCTATAAAAGAGGCAATGGGTGTGTTTAGACAGATGCAGGGGGCAGGATGCGTGCCAAATGCAGCTACTTATAGTATTTTGTTAAATTTGTATGGGAGGCATGGGAGATATGATGATGTCCGTGATCTTTTTCTTGAGATGAAAGTTAGTAATACAGAGCCAAATGCAGCTACTTATAATATTCTCATTAATGTTTTTGGGGAGGGTGGGTATTTTAAGGAGGTGGTGACTTTGTTCCATGATATGGTGGAGGAGAATGTTGAGCCAAATATGGAGACCTATGAGGGGTTGATATTTGCTTGTGGGAAGGGAGGGCTTCATGAGGATGCCAAGAAAATTCTACTTCACATGAATGAGAAAGGGGTGGTGCCGAGTTCAAAGGCCTATACTGGGGTTATTGAAGCATATGGACAGGCTGCTTTGTATGAGGAAGCGCTTGTTGCATTCAACACAATGAATGAAGTGGGGAGTAAGCCAACTGTGGAAACCTACAATTCATTGATTCAAATGTTTGCAAAAGGTGGGCTTTACAAGGAGTCTGAAGCAATTTTGCTGAAGATGGGTCAGTCTGGTGTTGCACGGAACCGGGATACGTTCAATGGTGTGATTGAAGCTTTTAGACAGGGAGGCCAGTTTGAAGAAGCTATAAAGGCTTATGTTGAGATGGAAAAGGCAAGATGTGATCCTGATGAGCAAACCCTTGAGGCAGTGCTAAGTGTTTATTGCTTTGCCGGTCTTGTGGAAGAGAGCGAAGAGCAGTTTGGGGAAATTAAAGCTTTGGGAATATTACCCAGTGTCATGTGCTATTGCATGATGCTGGCAGTTTATGCAAAGGCTGACAGGTGGGATGATGCCCATCAATTGCTGGATGAGATGTTTACAAATAGGGTATCCAACATTCATCAGGTAATTGGTCAGATGATCAGGGGAGATTATGACGATGATTCTAACTGGCAGATGGTTGAGTATGTCTTTGAGAAACTCAAGTCTGAAGGTTGTAGTTTGGGAGTGAGGTTCTACAATACGCTCTTAGAAGCACTTTGGTGGCTGGGCCAGAAGGAACGTGCAACAAGAGTACTCAATGAAGCAACAAAACGGGGGCTTTTTCCTGAGCTTTTTCGCAAAAACAAACTTGTGTGGTCTGTAGATGTACACAGGATGTGGGAAGGTGCTGCATGTACAGCAATATCAGTTTGGCTCAATAATATGCATGAAATGTTCATTAGTGGGGATGATCTTCCTCAACTAGCAAGTGCTGTAGTTGTGCGTGGGCATATGGAGAAAAGTTCAATAACGCGTGATTTTCCAGTTGCAAAATCTGCATATGCATTTCTAAATGAAGTTTCATCATCCTTCTGTTTCCCTGGTTGGAACAAGGGTCGAATTGTCTGCCAGCGCTCTCAGCTCAAGCGAATTCTATCCGTTACAGAGCAGCATTCAGATGAATACAAAAAGGATAGAATAATCACTCTAAGTAACTCTCCCTTTCCACTTCCTGGAACAAATACATCCATGAGTAATGTCAAAAGAGACCAGCTTAGCAATGCTGATGCTGAAAGAAGCATTATGACTAGAACAGAGCTTATGACAAGCACAGTTTAA 1884 42.52 MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPELFRKNKLVWSVDVHRMWEGAACTAISVWLNNMHEMFISGDDLPQLASAVVVRGHMEKSSITRDFPVAKSAYAFLNEVSSSFCFPGWNKGRIVCQRSQLKRILSVTEQHSDEYKKDRIITLSNSPFPLPGTNTSMSNVKRDQLSNADAERSIMTRTELMTSTV* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8441136 8447388 + Vvi17g671 Vvi17g671 779368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g671 627 TIGRFAM PPR: pentatricopeptide repeat domain 187 219 IPR002885 -
Vvi17g671 627 TIGRFAM PPR: pentatricopeptide repeat domain 47 79 IPR002885 -
Vvi17g671 627 TIGRFAM PPR: pentatricopeptide repeat domain 362 389 IPR002885 -
Vvi17g671 627 TIGRFAM PPR: pentatricopeptide repeat domain 82 115 IPR002885 -
Vvi17g671 627 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Vvi17g671 627 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Vvi17g671 627 TIGRFAM PPR: pentatricopeptide repeat domain 11 45 IPR002885 -
Vvi17g671 627 TIGRFAM PPR: pentatricopeptide repeat domain 152 184 IPR002885 -
Vvi17g671 627 Gene3D Tetratricopeptide repeat domain 199 318 IPR011990 GO:0005515
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vvi17g671 627 Pfam PPR repeat 330 356 IPR002885 -
Vvi17g671 627 Pfam PPR repeat 362 389 IPR002885 -
Vvi17g671 627 Pfam PPR repeat 292 321 IPR002885 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Vvi17g671 627 Gene3D Tetratricopeptide repeat domain 1 90 IPR011990 GO:0005515
Vvi17g671 627 Gene3D Tetratricopeptide repeat domain 91 195 IPR011990 GO:0005515
Vvi17g671 627 Gene3D Tetratricopeptide repeat domain 330 402 IPR011990 GO:0005515
Vvi17g671 627 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi17g671 627 Pfam PPR repeat family 78 123 IPR002885 -
Vvi17g671 627 Pfam PPR repeat family 151 195 IPR002885 -
Vvi17g671 627 Gene3D Tetratricopeptide repeat domain 403 506 IPR011990 GO:0005515
Vvi17g671 627 Pfam Pentatricopeptide repeat domain 1 57 IPR002885 -
Vvi17g671 627 Pfam Pentatricopeptide repeat domain 418 466 IPR002885 -
Vvi17g671 627 Pfam Pentatricopeptide repeat domain 211 266 IPR002885 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Vvi17g671 627 ProSiteProfiles Smr domain profile. 476 564 IPR002625 -
Vvi17g671 627 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 1 589 - -
Vvi17g671 627 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 1 589 - -
Vvi17g671 627 SMART SMR_2 473 561 IPR002625 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vvi17g671 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g671 - - - vvi:100251853 1258.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g671 . . . . . . Bma06g00193 . . Cmo18g00111 . . . . . Cpe20g00216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi08g01440 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008894 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 34