Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g672 ATGTCTCGCTGCTGTTCTCAGTGTGGTCATAATGGTCATAATTCTCGCACATGGATCATGCTGTTTGGAGTGAGAGTCACTGTGGATTCGATGCGTAAGAGCGTCAGTTTGAACAATCTGTCGCAGTATGAGCAGCCTCACGAGTCTTCCAACGCCGATGCCACCCCCGCCGCTGGATACGTTTCCGCCGACGATGTGGCTCACCACTCCTCAGGGAATCGCGAGCGCAAGCGAGGTGTCCCATGGACAGAAGAAGAACACAAGCTTTTCCTGGTTGGATTGCAGAAAGTTGGAAAAGGAGACTGGCGAGGAATCTCCAGGAATTTCGTGAAAACTCGAACTCCAACACAGGTCGCAAGTCATGCTCAGAAGTACTTTCTCCGCAGAAACAATCTCAATCGACGACGCCGCAGATCTAGCCTCTTCGACATCACCACCGAATCGGTCACGGCAGTTCCCATGGAAGAAGAGCAAGTACTTCATCATCAAGAGAACACATCTCAATCGCAGCAGTCTCCTAAGACTTTTTCCGAGACCGGCAGTGGCGGACAAAATGATGTTAATACAAGGCTGGTCCGTCCGATTCCCGTTCTTCCTATTCCTCCCGAGTCAACGGATCTCAACTTGAATCTGAAGTCCTCAGTTGATCCATCCCCCTTGTCACTGAAGCTCTCCCTCTCATCCAATCAGAATCATCCAAATCAACCATCTAGGCACTCCGCTTTTCAGGCTATGTCAAGCTTCAACAACGGTGATAGCATCATAAGCGTTGCTTGA 777 50.06 MSRCCSQCGHNGHNSRTWIMLFGVRVTVDSMRKSVSLNNLSQYEQPHESSNADATPAAGYVSADDVAHHSSGNRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNLNRRRRRSSLFDITTESVTAVPMEEEQVLHHQENTSQSQQSPKTFSETGSGGQNDVNTRLVRPIPVLPIPPESTDLNLNLKSSVDPSPLSLKLSLSSNQNHPNQPSRHSAFQAMSSFNNGDSIISVA* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8454311 8456118 + Vvi17g672 Vvi17g672 779369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g672 258 MobiDBLite consensus disorder prediction 163 188 - -
Vvi17g672 258 SUPERFAMILY Homeodomain-like 76 131 IPR009057 -
Vvi17g672 258 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Vvi17g672 258 PANTHER KIN2 180 258 - -
Vvi17g672 258 PANTHER KIN2 12 175 - -
Vvi17g672 258 MobiDBLite consensus disorder prediction 158 188 - -
Vvi17g672 258 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
Vvi17g672 258 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Vvi17g672 258 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 12 175 - -
Vvi17g672 258 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 180 258 - -
Vvi17g672 258 SMART sant 78 128 IPR001005 -
Vvi17g672 258 Gene3D - 80 132 - -
Vvi17g672 258 CDD SANT 81 126 IPR001005 -
Vvi17g672 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
Vvi17g672 258 ProSiteProfiles SANT domain profile. 77 130 IPR017884 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g672 - - - vvi:100265707 445.277
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g806 Vvi17g672 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g672 Blo04g00752 . . Bda15g00706 Bpe12g00497 . . . . . . . . . Sed08g0179 . Cpe04g01530 Bhi02g00380 Tan09g2185 Cmetu02g0204 . Hepe09g0159 . . Cla06g01627 Cam06g1808 Cec06g1859 Cco06g1865 Clacu06g1768 Cmu06g1711 Cre06g2530 Cone2ag0877 . Cone13ag0104 . Lsi02g00340 Csa01g00811 . . Blo13g00036 . Bda11g01577 . Bpe07g00811 Bpe15g00619 . . . . . . . . . . Cpe18g00819 . . . . . . . . . . . . . . Lsi06g01508 . Chy02g02541 Cme02g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14223 PF00249 Myb_DNA-binding 1.10E-11 CL0123 Vvi TF