Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g673 ATGAAAGTGATGAGGAAGGACACTATCATAAGCAAGAATCACATGGATTATATGAAGGCTGAGAGGGATATTCTCATCAAAGTGGAGCATCCATTTATCGTCAGCCTTAGGTGCTCTTTTCAGACAAACTCTAAACTCTATTTGATCATGGATTTTGTAAATGGAGGGCACCTCTTCTTTCATCTATACAGACAGGGCATCTTCAGCGAGGATCAGGCAAGGGTTTATATTGCTGAGATAGTATCTGCTGTTTCCCATCTTCACAAGAGCGGCATCGTACATCGGGATCTTAAACCTGAAAATATTCTCATGGACGCTGATGGGCATGTTATGCTAACTGATTTTGGACTGGCAAAAGAAATTGATGAGTCAAGCAGATCTAATTCAATGTGTGGAACCACAGAATACATGGCTCCAGAAATCTTACTTTCTAAGGGGCACAATAAAGATGCGGATTGGTGGAGTATTGGGATACTCTTGTATGAAATGTTAACTGGGCAGCCTCCATTCACACATGCAAATAGACAAAAGCTTCAGCAGAGAATTATCAAAGAGAAGGTGAAGCTTCCTTCATACCTAAGCAGTGAAGCTCACTCTTTGCTCAAAGGATTGCTGCAAAAGGAACCATCAAGAAGGCTAGGCAGTGGTCCTACTGGAGGAGATGAGATTCAAAATCATAAATGGTTTCGGTCAATCAACTGGAAGAAATTGGAGGCCAGAGAATTGCAGCCAAAGTTCAAGCCAGATGTGAGTGGAAAAGACTGCACAGCCAATTTCGACCAATGCTGGACAGCAATGCCTCTGGATGACTCCCCAGCTCCCACACCAACAGCAGGTGGGCATTTCCAAGGGTATACTTATGTTGCACCTAACCCTTGGCTTTCATCTTGA 891 43.21 MKVMRKDTIISKNHMDYMKAERDILIKVEHPFIVSLRCSFQTNSKLYLIMDFVNGGHLFFHLYRQGIFSEDQARVYIAEIVSAVSHLHKSGIVHRDLKPENILMDADGHVMLTDFGLAKEIDESSRSNSMCGTTEYMAPEILLSKGHNKDADWWSIGILLYEMLTGQPPFTHANRQKLQQRIIKEKVKLPSYLSSEAHSLLKGLLQKEPSRRLGSGPTGGDEIQNHKWFRSINWKKLEARELQPKFKPDVSGKDCTANFDQCWTAMPLDDSPAPTPTAGGHFQGYTYVAPNPWLSS* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8459180 8463972 - Vvi17g673 Vvi17g673 779370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g673 296 ProSiteProfiles AGC-kinase C-terminal domain profile. 230 296 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi17g673 296 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g673 296 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 296 - -
Vvi17g673 296 SUPERFAMILY Protein kinase-like (PK-like) 1 288 IPR011009 -
Vvi17g673 296 Gene3D Transferase(Phosphotransferase) domain 1 53 248 - -
Vvi17g673 296 Pfam Protein kinase C terminal domain 250 287 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi17g673 296 SMART pkinase_C_6 230 289 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi17g673 296 Pfam Protein kinase domain 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g673 296 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 296 - -
Vvi17g673 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 92 104 IPR008271 GO:0004672|GO:0006468
Vvi17g673 296 Gene3D Phosphorylase Kinase; domain 1 1 271 - -
Vvi17g673 296 SMART serkin_6 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76325 PF00069 Pkinase 2.90E-67 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g673 K04688 - vvi:100244943 613.609