Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g673 | ATGAAAGTGATGAGGAAGGACACTATCATAAGCAAGAATCACATGGATTATATGAAGGCTGAGAGGGATATTCTCATCAAAGTGGAGCATCCATTTATCGTCAGCCTTAGGTGCTCTTTTCAGACAAACTCTAAACTCTATTTGATCATGGATTTTGTAAATGGAGGGCACCTCTTCTTTCATCTATACAGACAGGGCATCTTCAGCGAGGATCAGGCAAGGGTTTATATTGCTGAGATAGTATCTGCTGTTTCCCATCTTCACAAGAGCGGCATCGTACATCGGGATCTTAAACCTGAAAATATTCTCATGGACGCTGATGGGCATGTTATGCTAACTGATTTTGGACTGGCAAAAGAAATTGATGAGTCAAGCAGATCTAATTCAATGTGTGGAACCACAGAATACATGGCTCCAGAAATCTTACTTTCTAAGGGGCACAATAAAGATGCGGATTGGTGGAGTATTGGGATACTCTTGTATGAAATGTTAACTGGGCAGCCTCCATTCACACATGCAAATAGACAAAAGCTTCAGCAGAGAATTATCAAAGAGAAGGTGAAGCTTCCTTCATACCTAAGCAGTGAAGCTCACTCTTTGCTCAAAGGATTGCTGCAAAAGGAACCATCAAGAAGGCTAGGCAGTGGTCCTACTGGAGGAGATGAGATTCAAAATCATAAATGGTTTCGGTCAATCAACTGGAAGAAATTGGAGGCCAGAGAATTGCAGCCAAAGTTCAAGCCAGATGTGAGTGGAAAAGACTGCACAGCCAATTTCGACCAATGCTGGACAGCAATGCCTCTGGATGACTCCCCAGCTCCCACACCAACAGCAGGTGGGCATTTCCAAGGGTATACTTATGTTGCACCTAACCCTTGGCTTTCATCTTGA | 891 | 43.21 | MKVMRKDTIISKNHMDYMKAERDILIKVEHPFIVSLRCSFQTNSKLYLIMDFVNGGHLFFHLYRQGIFSEDQARVYIAEIVSAVSHLHKSGIVHRDLKPENILMDADGHVMLTDFGLAKEIDESSRSNSMCGTTEYMAPEILLSKGHNKDADWWSIGILLYEMLTGQPPFTHANRQKLQQRIIKEKVKLPSYLSSEAHSLLKGLLQKEPSRRLGSGPTGGDEIQNHKWFRSINWKKLEARELQPKFKPDVSGKDCTANFDQCWTAMPLDDSPAPTPTAGGHFQGYTYVAPNPWLSS* | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8459180 | 8463972 | - | Vvi17g673 | Vvi17g673 | 779370 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g673 | 296 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 230 | 296 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Vvi17g673 | 296 | ProSiteProfiles | Protein kinase domain profile. | 1 | 229 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g673 | 296 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 1 | 296 | - | - | |
Vvi17g673 | 296 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 288 | IPR011009 | - | |
Vvi17g673 | 296 | Gene3D | Transferase(Phosphotransferase) domain 1 | 53 | 248 | - | - | |
Vvi17g673 | 296 | Pfam | Protein kinase C terminal domain | 250 | 287 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Vvi17g673 | 296 | SMART | pkinase_C_6 | 230 | 289 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Vvi17g673 | 296 | Pfam | Protein kinase domain | 1 | 229 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi17g673 | 296 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 1 | 296 | - | - | |
Vvi17g673 | 296 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 92 | 104 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi17g673 | 296 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 271 | - | - | |
Vvi17g673 | 296 | SMART | serkin_6 | 1 | 229 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76325 | PF00069 | Pkinase | 2.90E-67 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g673 | K04688 | - | vvi:100244943 | 613.609 |