Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g674 ATGGAGCTCCAGAACACAGTGAAAGAAGCCCTAAACGCACTCTACCATCATCCAGACGACTCCGTTCGGATGCAAGCCGATCGTTGGCTCCAAGATTTTCAACGCACCATCGATGCTTGGCAGGTCTCCGATAATTTGCTGCATGATGCAACTAGCAATCTAGAAACTTTAATCTTTTGTTCTCAAACCCTTAGAAGCAAGGTGCAACGAGATTTTGAAGAACTACCTTCAGAAGCTTTTCGCCCATTAAGGGATTCCCTCAATACCTTATTGAAAAAATTTCACAAGGGCCCCCCTAAAGTCAGAACTCAGATTAGCATTGCGGTGGCTGCCTTGGCTGTTCATGTTCCTGCGGAAGATTGGGGAGATGGTGGCATTGTGAAGTGGCTTAGGGATGAGATGAATTCTCATCCAGAATTCATACCGGGATTTTTAGAGCTACTCATGGTTTTGCCTGAGGAAGTTTTCAACTACAAAATAGCAGCTCGTCCAGAAAGACGCCGTCAATTTGAAAAAGAACTCACTTCTGAAATGGAGGTTGCTCTGAATATCTTGACTGCTTGTTTGAATATTAATGAACTAAAAGAGCAGGTTCTTGAAGCGTTTGCTTCTTGGCTTCGGCTGAGGCATGGGATTCCTGGAGCTGTGCTTGCTTCTCACCCGCTGGTGCTTACAGCTCTCTCTAGTTTAAACTCTGAGCTACTTTCAGAGGCTTCTGTGAATGTTGTTTCGGAATTGATACACTACACGACTGCTGGAAGCTCTGGCGGTGCTTCTGTACAAATCCCATTAATCCAAGTAATTGTGCCCCAAGTCATGAATCTTAAGGTGCAGCTTAGAGATTCTTCAAAGGATGAGGAAGATGTGAAAGCTATTGGTCGTTTATTTGCTGACATGGGTGATTCATATGTTGAATTGATTGCAACTGGTTCTGATGAATCAATGTTGATAGTGCATGCATTATTAGAAGTTGCATCACATCCGGAGTATGATATTGCTTCAATGACATTTAACTTCTGGCACAATCTTCAGGTCAACTTGACTAAAAGGGATGCTTACCTGTCATTTGGTAATGAAGCATCCATTGAAGCTGAGAGAAATAGGAGGCTGCAAGTTTTTCGTTCATCATATGAGTCACTTGTATCCCTGGTTAGCTCTCGAGTTCGATATCCCGAAGATTATCAAGATCTGTCATACGAGGACCTCAAGGATTTTAAACAGACTAGATATGCTGTTGCGGATGTGTTAATCGATGCAGCATCAGTTTTAGGCGGTGAAGCAACATTGAAAATTCTTTACATGAAGCTTGTTGAGGCTGTAGCTAGCTGTGGAAATGAGGAACACAATGAGTGGCGTCCAGCAGAGGCTGCTTTATATTGTATCCGAGCTATATCAAATTACGTTTCAGTCGTTGAAGCTGAAGTAATGCCTCAGGTTATGAATATGCTTCCAAAACTTCCCCATCAACCCCAATTATTGCAGACAGTGTGCTTAACAATTGGAGCATATTCAAAATGGCTTGATGCTGCGCCAGGTGGACTCTCAATTTTTCCTTCAGTCATAGATATTCTCATGAGTGGCATGAGTATATCTGAGGACTCTGCAGCAGCTGCTGCTTTGGCATTTAAACACATCTGTGATGATTGCCGGAAAAAGCTTTGTGGATCTTTAGATGGTCTGTTCCATATATATCATAGGGCAGTGAATGGGGAAGGTAATTTTAAAGTCCCTGCTGAAGACTCGCTTCACCTGGTTGAAGCCTTAAGTATGGTTATCACAGAACTTCCTCCAGATCATGCTAAGAAAGCCCTGGAGGCATTATGCTTGCCTGTTGTTACTTCTCTACAGGAAGTTGTCAATCAAGGTCCAGAAATATTGGATAAGAAAGTTGCTCGTGAGTTTACAGTTCATATTGATCGCTTTGCATATATTTTTAGATATGTAAATCACCCTGAAGCAGTGGCAGATGCAATTCAGAGGCTTTGGCCAATTTTCAAGGCAATCTTTGATGTTCGTGCTTGGGATATGCGAACTATGGAGTCTCTTTGCCGAGCTTGCAAATATGCTGTGAGAACTTCTGGAAGGTTCATGGGAATCACAATTGGGGCTATGCTAGAGGAGATTCAAGGCCTATATCAACTACACCACCAACCATGCTTTCTTTATCTTTCTAGTGAAGTTATAAAGATATTTGGGTCTGACCCATCTTGTGCAAACTACTTAAAGAATTTGATTGAAGCGCTATTCAGCCACACAACATGTCTTCTCAAAAACATTCGGGAGTTTACTGCCAGACCGGACATAGCGGATGATTGTTTTTTGTTGGCATCTAGATGCATTCGCTATTGTCCTCAATTATTTATTCCATCAGCAGTGTTTCCATCATTAGTAGATTGTTCTATGATTGGGGTCACTGTACAACACAGAGAAGCCTCCAATTCCATATTGACCTTCTTATCCGATATCTTTGATCTTGCTAAGACTAGTCCGGGAGAACAATACCAATCTATCAGGGACACTGTGATTATTCCGCGAGGTGCCAGCATCACTAGAATTCTGATTGCCTGCTTAACAGGAGCGCTCCCAAGTTCTCGACTGGAAACGGTAACATATGCACTGCTAGCCCTAACTCGAGCATATGGGATGAAAGCAGTGGAGTGGGCAAAGGACTGCATTTCATTGGTTCCATTGACAGCGGTGACAGAGGTGGAGCGGACTAGATTTTTGCAGACATTGTCAAATGTAGCAACAGGGGCTGATATAAACACCCTAACAGTTTCGATGGAAGAGCTGTCAGATGTGTGCCGCCGGAACCGAACAGTTCAAGAGATTGTTCAGGGAGCATTAAGGCCCCATGAGTTGAACTTGGCCCCTGTATCATAG 2883 43.08 MELQNTVKEALNALYHHPDDSVRMQADRWLQDFQRTIDAWQVSDNLLHDATSNLETLIFCSQTLRSKVQRDFEELPSEAFRPLRDSLNTLLKKFHKGPPKVRTQISIAVAALAVHVPAEDWGDGGIVKWLRDEMNSHPEFIPGFLELLMVLPEEVFNYKIAARPERRRQFEKELTSEMEVALNILTACLNINELKEQVLEAFASWLRLRHGIPGAVLASHPLVLTALSSLNSELLSEASVNVVSELIHYTTAGSSGGASVQIPLIQVIVPQVMNLKVQLRDSSKDEEDVKAIGRLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHNLQVNLTKRDAYLSFGNEASIEAERNRRLQVFRSSYESLVSLVSSRVRYPEDYQDLSYEDLKDFKQTRYAVADVLIDAASVLGGEATLKILYMKLVEAVASCGNEEHNEWRPAEAALYCIRAISNYVSVVEAEVMPQVMNMLPKLPHQPQLLQTVCLTIGAYSKWLDAAPGGLSIFPSVIDILMSGMSISEDSAAAAALAFKHICDDCRKKLCGSLDGLFHIYHRAVNGEGNFKVPAEDSLHLVEALSMVITELPPDHAKKALEALCLPVVTSLQEVVNQGPEILDKKVAREFTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDVRAWDMRTMESLCRACKYAVRTSGRFMGITIGAMLEEIQGLYQLHHQPCFLYLSSEVIKIFGSDPSCANYLKNLIEALFSHTTCLLKNIREFTARPDIADDCFLLASRCIRYCPQLFIPSAVFPSLVDCSMIGVTVQHREASNSILTFLSDIFDLAKTSPGEQYQSIRDTVIIPRGASITRILIACLTGALPSSRLETVTYALLALTRAYGMKAVEWAKDCISLVPLTAVTEVERTRFLQTLSNVATGADINTLTVSMEELSDVCRRNRTVQEIVQGALRPHELNLAPVS* 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8466167 8517606 - Vvi17g674 Vvi17g674 779371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g674 960 Gene3D - 2 936 IPR011989 -
Vvi17g674 960 SUPERFAMILY ARM repeat 1 856 IPR016024 -
Vvi17g674 960 Pfam Exportin 1-like protein 98 242 IPR013598 -
Vvi17g674 960 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 3 956 - -
Vvi17g674 960 PANTHER TRANSPORTIN MOS14 3 956 - -
Vvi17g674 960 Pfam Importin-beta N-terminal domain 26 90 IPR001494 GO:0006886|GO:0031267
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g674 K15436 TRPO3, MTR10; transportin-3 - vvi:100243383 1858.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008466 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35