Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g675 ATGGCCGATCCCTATCAACCATCGCCGTCTTCTCAAAGTGTTTCAAGGGCTAGACCGGAAGGGAAGCGAACGATAGAACAGGGAGTGGAGTATCTCAAGTTTGTGAGGGATACATTTGGGTCTCGCAACGATAGCCGATACCGTGGTTTTTTGCGAGTCATGAAAGATTACAAGGGAGGAATATTTGATACCCTGGAAGTTATATCATTGGTGAAGGAGATGTTTGAGGGCCACCATGAACTCTTGACGGGTTTCAACATCTTGTTGCCAAGAGGATACAGTATTAATTCTGTTGCACCTACAAAAGACCCACCAACAGCATTGGAAGCTCGTGTGGAGGCCGTCAACTTAGTAAACAAAATCAGGACCCGGTTGCAGGATGACAAGCTTTACAGATCCCTCGTTGATGTTATGTGCAAATATGGAAGGAATCCCCGTGTTAACATTCTTCTCAAAGAGGGCTTGCTGGGGACCTGTTGTGGGTGCCATCACCTAAATCTTTTTACCTCTCAAAAGTGCAGAAATCTTTGGAATTTGGAAAATAAAACGAGGGAACAATAG 561 44.92 MADPYQPSPSSQSVSRARPEGKRTIEQGVEYLKFVRDTFGSRNDSRYRGFLRVMKDYKGGIFDTLEVISLVKEMFEGHHELLTGFNILLPRGYSINSVAPTKDPPTALEARVEAVNLVNKIRTRLQDDKLYRSLVDVMCKYGRNPRVNILLKEGLLGTCCGCHHLNLFTSQKCRNLWNLENKTREQ* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8528863 8536897 + Vvi17g675 Vvi17g675 779372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g675 186 Gene3D Paired amphipathic helix 28 90 IPR036600 GO:0006355
Vvi17g675 186 ProSiteProfiles PAH domain profile. 18 92 IPR003822 GO:0006355
Vvi17g675 186 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g675 186 PANTHER SIN3B-RELATED 12 143 IPR039774 GO:0003714
Vvi17g675 186 SUPERFAMILY PAH2 domain 20 91 IPR036600 GO:0006355
Vvi17g675 186 MobiDBLite consensus disorder prediction 1 18 - -
Vvi17g675 186 Pfam Paired amphipathic helix repeat 46 86 IPR003822 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g675 K11644 SIN3A; paired amphipathic helix protein Sin3a - vvi:100250081 295.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g802 Vvi17g675 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013218 1 0 0 1 0 2 1 2 2 0 1 2 1 1 1 1 2 0 1 2 0 1 1 0 0 0 1 1 0 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14224 PF02671 PAH 1.40E-08 No_clan Vvi TR