Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g678 ATGAATATTTTTATAGCTATTATATCTATATATATACAATACTTTAAATATAAATATTTAATAAATAAATTTGTCCTTTTCATCTTCTTACACCACACTATTTCAGTATTTTTGATGTTCTCGTCAATCGCCCACAACTTGCATTACAAGTCACTTCCGCTCCATTCGGTTCCTCCACCACTGTATAAATATTGGAAGCAGATTCCCCGCACATTTCTGGTTATGGGTTCCGCCGCCGGCGAATTTCTTCGGCATGTGTTACCGGAGAAAGTTGGGGTTTCTGATCACTCCGCTGCTGGATCGGAGCTCCATGTTCTTGCTGTTGATGATAGCCATGTGGATCGGAAGGTGATTGAGAGGCTGCTCAAGATATCTTCTTGTAAAGTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGATGGTTTGAAGGTGAATCTGATCATGACGGACTATTCTATGCCTGGGATGACAGGGTATGAGTTGCTCAAGAAGATCAAGGAGTCAAAGGCTTTCAGAAAGATACCAGTGGTGATCATGTCTTCAGAAAACATCCTGACTCGCATTGACAGGTGTTTAGAGGAAGGTGCAGAGGAGTTTATAGTGAAACCAGTAAAACTGGCAGACGTGAGACGCCTGAGAGATTTCATAATGAGAGGAGAGGAAGAGGGAGAGGAAAATAGGAAGAAAGGGAACCATAAGAGAAAGCTACAAGATGATTACAGCATCTCACCCCCATTGTCACCAGCACCATCACTTGATTGTGAGATATCCTCGTTGCTACTACCATCTTCTTCTTCTTCTTCTCCAGAGTGTCCTTCAAAGCGACCTAGATTGTGGGTTGAAGATTAA 891 43.21 MNIFIAIISIYIQYFKYKYLINKFVLFIFLHHTISVFLMFSSIAHNLHYKSLPLHSVPPPLYKYWKQIPRTFLVMGSAAGEFLRHVLPEKVGVSDHSAAGSELHVLAVDDSHVDRKVIERLLKISSCKVTAVESGTRALQFLGLDGEENSVGFDGLKVNLIMTDYSMPGMTGYELLKKIKESKAFRKIPVVIMSSENILTRIDRCLEEGAEEFIVKPVKLADVRRLRDFIMRGEEEGEENRKKGNHKRKLQDDYSISPPLSPAPSLDCEISSLLLPSSSSSSPECPSKRPRLWVED* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8563254 8583094 - Vvi17g678 Vvi17g678 779375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g678 296 MobiDBLite consensus disorder prediction 271 286 - -
Vvi17g678 296 SUPERFAMILY CheY-like 101 230 IPR011006 -
Vvi17g678 296 MobiDBLite consensus disorder prediction 235 296 - -
Vvi17g678 296 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR6 99 292 - -
Vvi17g678 296 CDD REC_typeA_ARR 105 226 - -
Vvi17g678 296 Pfam Response regulator receiver domain 105 224 IPR001789 GO:0000160
Vvi17g678 296 SMART REC_2 103 227 IPR001789 GO:0000160
Vvi17g678 296 PANTHER TWO-COMPONENT RESPONSE REGULATOR 99 292 IPR045279 GO:0009736
Vvi17g678 296 ProSiteProfiles Response regulatory domain profile. 104 231 IPR001789 GO:0000160
Vvi17g678 296 MobiDBLite consensus disorder prediction 235 253 - -
Vvi17g678 296 Gene3D - 103 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g794 Vvi17g678 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14225 PF00072 Response_reg 6.10E-21 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g678 K14492 - vvi:100258759 485.337