Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g68 ATGGCAGTTTCAGTTGATGAGAAGAAGAAGAGTTTCACTCTTCGAAAATCTGAAGAGGCCTTCGAAATCGCTAAGGAGTTGATGCCTGGTGGTGTGAATTCACCTGTTCGTGCCTTCAAATCAGTTGGTGGACAGCCTATTTTGTTTGATTCTGTCAAGGGCTCTCACATGTGGGACATAGATGGCAATGAATACATTGACTACGTTGGTTCATGGGGGCCAGCAATCATTGGTCATGCTGATGATGAGGTACTGGCAGCCTTGGCTGAAACAATGAAGAAAGGAACAAGCTTTGGTGCCCCTTGTCTTCTGGAGAATATTCTGGCCGAGATGGTTATATCTGCTGTTCCAAGCATAGAGATGGTTCGCTTTGTTAACTCGGGTACTGAAGCATGCATGGGCATGCTCCGCCTAGCCCGTGCCTTCACTGGCAAGGAGAAAATCATAAAGTTTGAGGGTTGCTACCATGGCCATGCTGATCCATTCCTTGTCAAGGCAGGCAGTGGAGTTGCAACCCTGGGGCTACCTGACTCACCTGGTGTTCCCAGGGCAGCCACCTTTGAAACTCTAACATCACCCTTCAATGACTTATCAACTGTGGAAAAACTCTTCGAGGCGAATAAAGGAGAGATTGCAGCAGTCATCCTTGAACCTGTTGTTGGAAACTCTGGCTTCATAGCTCCCAAACCTGACTTCCTGAATGCTCTCCAAGAAATCACCAAAGAAAATGGTGCTCTCCTTGTCTTTGATGAAGTTATGACAGGTTTCCGCATATCTTATGGTGGTGCCCAGGAATACTTTGGCATTACACCTGATATAACAACACTTGGAAAGATCATTGGTGGTGGCCTGCCTGTTGGTGCATATGGAGGAAGGAGGGAGATCATGGAGTTGGTGGCACCAGCAGGCCCAATGTACCAGGCAGGAACCTTGAGTGGGAACCCATTGGCAATGACAGCAGGCATCCAAACACTAAAGCGGTTGAAGGAGCCAGGATCATACGAATACTTGGATAAAATCACTGGTGAACTTATTCAGGGCATTTTGGATGCTGGAAAAAAGGCTGGGCATGCCATATGTGGTGGATATATTAGTGGGATGTTTGGGTTTTTCTTCACAGAGGGACCTGTTTACAACTTTGGGGATGCAAAGAATAATATCCAACAAACGATAGCAGCAGCTGAGAAGGTTTTCCGGAAAATTTAG 1206 46.68 MAVSVDEKKKSFTLRKSEEAFEIAKELMPGGVNSPVRAFKSVGGQPILFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENILAEMVISAVPSIEMVRFVNSGTEACMGMLRLARAFTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPRAATFETLTSPFNDLSTVEKLFEANKGEIAAVILEPVVGNSGFIAPKPDFLNALQEITKENGALLVFDEVMTGFRISYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRREIMELVAPAGPMYQAGTLSGNPLAMTAGIQTLKRLKEPGSYEYLDKITGELIQGILDAGKKAGHAICGGYISGMFGFFFTEGPVYNFGDAKNNIQQTIAAAEKVFRKI* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 592603 596839 - Vvi17g68 Vvi17g68 778765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g68 401 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 16 401 IPR004639 GO:0033014|GO:0042286
Vvi17g68 401 Gene3D Aspartate Aminotransferase, domain 1 19 392 IPR015422 GO:0003824
Vvi17g68 401 Gene3D - 82 330 IPR015421 GO:0003824
Vvi17g68 401 PANTHER BNAA09G06670D PROTEIN 1 386 - -
Vvi17g68 401 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 1 386 - -
Vvi17g68 401 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 247 283 IPR005814 GO:0008483|GO:0030170
Vvi17g68 401 Pfam Aminotransferase class-III 47 355 IPR005814 GO:0008483|GO:0030170
Vvi17g68 401 SUPERFAMILY PLP-dependent transferases 15 383 IPR015424 -
Vvi17g68 401 CDD OAT_like 21 384 IPR005814 GO:0008483|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g68 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] - vvi:100250737 773.852
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g68 . Blo16g00282 . . . Bpe13g00193 Bma06g00273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01586 Bda14g01345 . Bpe15g00234 Bma03g01235 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006338 3 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38