Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g681 ATGTTGATACTGGCAAACAGACTTTCGTCTCTACGCCCAACAGAACCCCTTCTAAAACCCATATCCTACAACTACAATCTCACAACCACCACATCACCACCGTCGCCGCCGCAAGACGCCACCATCGTCAACCTTGTGCTGAAAACTGACTCACAGACCCTGACGCGAACCCTAGAAAAATACCCAGTCGAATGGACCCCAAACCTCGTCGACAGAGTCCTCAAGCTCCTCTGGAACCACGGCCCCAAAGCCCTCCAATTCTTCAAGTCCCTCGATTATCACCCTACCTATGCACACGTCTCCTCCTCCTTCGACCACGCCATCGACATCGCTGGCCGTTTGCGCGATTACAAGACTCTCTGGACCCTCGTCGACCGTATGCGGACTCGTCGGCTCGGCCCCAATCCCAAAACCTTTGCAATAATCACTGAGAGGTACGTCTCCGCCGGAAAACCGGATAGGGCTATTAAGATATTCTTCTCGATGCATGAACATGGTTGTGTTCAAGATTTGAATTCGTTCAATACAATTCTCGATGTGTTATGCAAATCAAAGCGGGTGGAAATGGCTGATAATAAATTGTTTAAGGTTTTCAGGGGGTTCTTTAGGGCTGGTCAGTTGAAGGAAGCTTGGGAGTTCTTCTTGCAGATGAAGAAGAGAAAATGTGAAATTGATGTTGTCACTTACACTACTGTGGTTCATGGATTTGGAGTTGCTGGTGAGGTTCGAAAAGCTCAAAGGGTTTTTAATGAGATGATTGGGGAGGGGGTACTCCCATCGGTTGCAACTTATAATGCCTTTATTCAAGTGTTGTGTAAGAAAGATAATGTGGAAAATGCAATATCGGTTTTTGAGGAGATGTTGAGGAAGGGTTACATGCCCAATTCAACCACTTACAATGTAGTGATTAGAGGGTTGTGTCATGTGGGGAGAATGGAAAAGGCAATGGAGTTTATGGCCAGAATGAAGGATGATGAGTGTGAGCCGAATGTTCAGATATATAATGTTGTCATTCGTTATTTTTGTGATGCAGAAGAAATTGAGAAGGGTTTGAATGTTTTTGAGAAGATGGGGGATGCAGATTGCTTGCCCAATTTGGATACATACAATATTTTGATTAGCGCAATGTTTGTGAGGAAGAAATCAGACTATTTGTTGACAGCAGGAAAGTTATTGATTGAGATGGTTGAGAGAGGATTTTGCAAAAGAAATTCTGAGATTGCAGAGCAGATGTGGCCGTCTTCCTCGTCGGCTCAAGCTGTGAAGCTGAGCAGCATTCAGATTGTGAAAGTTGAATCCACCAGATCCAGTTGGAAAATGACATTATCTTCTTCTACGATTCAAGAATCCGCATCTCACCATCGCACTTACAGTAGAAAGCAAAAATCTCTGGGTCTCTTATGTTCTAATTTCTTGAGCTTGTACAATCGGGATGGGGTGGAACCGATTGGGCTCGATGATGCCGCAAGCCGACTAGGAGTTGAGAGGCGTCGGATCTATGACATTGTCAATGTTCTTGAAAGCGTTGGCGTTCTTGCAAGAAAAGCAAAAAATCAGTATTCTTGGAAAGGGTTTGGGGCAATTCCTAAGGCCCTAGAAGAACTTAGGGAAGAAGGTTTAAGGGAGAATTTCCATACCTTTGACAGCAACAACTCTGCAAAAGTAGATGACGAAGATGAAAGATTTTCCAATCCTAACACTGGGAGCCAGCAAGACAAATCAAACCCTAGTTCTAAACTGAATCTAAATGTTTTCTTCACAGACAACAGAAGAGAAAAATCACTGGGACTTCTTACACAGAATTTTGTGAAGCTATTTCTCTGCTCTAACGTGGATTTGATTTCCCTTGAAGAAGCTGCAAGGATATTGCTTGGGGATGGCCAGAACTCCTCAATAATGAGAACAAAAGTTAGACGGTTATATGATATTGCAAATGTGCTGTCTTCCATGAATCTCATTGAAAAGACTAATCAGACGGAAAACAGGAAGCCTGCATTCAGGTGGTTGGGGATGAGAGGAAAATCAGAGAATGGATCTTTAAGTGTTTTGAATCTTAATGAGTCTAAGAAAAGGACATTTGGTACTGAAATTACAAACATCAGCTTTAAAAGGAACAAGATGGCTTCTTCAGTTGAGGGGAATTCAAACCAGAATACAAAGATGCAATGGCAAATGCAAGTAAAGCATGAGAATTTGGAAAATGGGATTGAAAGAAGTGATTTTGAGAAGGGTCCAAAGCAAAGTTCAAAAAGTTACCAGTTTGGTCCTTTTGCTCCAGTTAGTGTTCAAGACACTGTGAGACAGGTTCGTGATTGGGAAAGTCTTGCATCTACATATCGTCCTCAGTACCACAGCCAAGCATTAAGAGACCTCTTTGCTCATTACATGGAAGCTTGGAAAACATGGTACTCTGAAGTAGCTGGGAAGGAGCCAATACAGATTTCTTGA 2448 42.93 MLILANRLSSLRPTEPLLKPISYNYNLTTTTSPPSPPQDATIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFCKRNSEIAEQMWPSSSSAQAVKLSSIQIVKVESTRSSWKMTLSSSTIQESASHHRTYSRKQKSLGLLCSNFLSLYNRDGVEPIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYSWKGFGAIPKALEELREEGLRENFHTFDSNNSAKVDDEDERFSNPNTGSQQDKSNPSSKLNLNVFFTDNRREKSLGLLTQNFVKLFLCSNVDLISLEEAARILLGDGQNSSIMRTKVRRLYDIANVLSSMNLIEKTNQTENRKPAFRWLGMRGKSENGSLSVLNLNESKKRTFGTEITNISFKRNKMASSVEGNSNQNTKMQWQMQVKHENLENGIERSDFEKGPKQSSKSYQFGPFAPVSVQDTVRQVRDWESLASTYRPQYHSQALRDLFAHYMEAWKTWYSEVAGKEPIQIS* 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8595970 8603212 + Vvi17g681 Vvi17g681 779378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g681 815 Pfam E2F/DP family winged-helix DNA-binding domain 592 670 IPR003316 GO:0005667|GO:0006355
Vvi17g681 815 Pfam E2F/DP family winged-helix DNA-binding domain 460 524 IPR003316 GO:0005667|GO:0006355
Vvi17g681 815 PANTHER OS02G0679200 PROTEIN 198 403 - -
Vvi17g681 815 PANTHER OS02G0679200 PROTEIN 23 199 - -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 138 170 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 197 226 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 298 331 IPR002885 -
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vvi17g681 815 MobiDBLite consensus disorder prediction 547 576 - -
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vvi17g681 815 Pfam Pentatricopeptide repeat domain 124 181 IPR002885 -
Vvi17g681 815 SUPERFAMILY Winged helix DNA-binding domain 458 522 IPR036390 -
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vvi17g681 815 Pfam PPR repeat family 198 236 IPR002885 -
Vvi17g681 815 Pfam PPR repeat family 329 376 IPR002885 -
Vvi17g681 815 Pfam PPR repeat family 259 308 IPR002885 -
Vvi17g681 815 SUPERFAMILY Winged helix DNA-binding domain 592 671 IPR036390 -
Vvi17g681 815 Gene3D - 586 672 IPR036388 -
Vvi17g681 815 Gene3D - 456 527 IPR036388 -
Vvi17g681 815 Gene3D Tetratricopeptide repeat domain 196 275 IPR011990 GO:0005515
Vvi17g681 815 Gene3D Tetratricopeptide repeat domain 68 195 IPR011990 GO:0005515
Vvi17g681 815 SMART E2F_TDP_2 590 670 IPR003316 GO:0005667|GO:0006355
Vvi17g681 815 SMART E2F_TDP_2 459 524 IPR003316 GO:0005667|GO:0006355
Vvi17g681 815 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 198 403 - -
Vvi17g681 815 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 23 199 - -
Vvi17g681 815 Gene3D Tetratricopeptide repeat domain 276 455 IPR011990 GO:0005515
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1456 Vvi17g681 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14226 PF02319 E2F_TDP 4.30E-20 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g681 - - vvi:100263983 799.275