Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g681 ATGTTGATACTGGCAAACAGACTTTCGTCTCTACGCCCAACAGAACCCCTTCTAAAACCCATATCCTACAACTACAATCTCACAACCACCACATCACCACCGTCGCCGCCGCAAGACGCCACCATCGTCAACCTTGTGCTGAAAACTGACTCACAGACCCTGACGCGAACCCTAGAAAAATACCCAGTCGAATGGACCCCAAACCTCGTCGACAGAGTCCTCAAGCTCCTCTGGAACCACGGCCCCAAAGCCCTCCAATTCTTCAAGTCCCTCGATTATCACCCTACCTATGCACACGTCTCCTCCTCCTTCGACCACGCCATCGACATCGCTGGCCGTTTGCGCGATTACAAGACTCTCTGGACCCTCGTCGACCGTATGCGGACTCGTCGGCTCGGCCCCAATCCCAAAACCTTTGCAATAATCACTGAGAGGTACGTCTCCGCCGGAAAACCGGATAGGGCTATTAAGATATTCTTCTCGATGCATGAACATGGTTGTGTTCAAGATTTGAATTCGTTCAATACAATTCTCGATGTGTTATGCAAATCAAAGCGGGTGGAAATGGCTGATAATAAATTGTTTAAGGTTTTCAGGGGGTTCTTTAGGGCTGGTCAGTTGAAGGAAGCTTGGGAGTTCTTCTTGCAGATGAAGAAGAGAAAATGTGAAATTGATGTTGTCACTTACACTACTGTGGTTCATGGATTTGGAGTTGCTGGTGAGGTTCGAAAAGCTCAAAGGGTTTTTAATGAGATGATTGGGGAGGGGGTACTCCCATCGGTTGCAACTTATAATGCCTTTATTCAAGTGTTGTGTAAGAAAGATAATGTGGAAAATGCAATATCGGTTTTTGAGGAGATGTTGAGGAAGGGTTACATGCCCAATTCAACCACTTACAATGTAGTGATTAGAGGGTTGTGTCATGTGGGGAGAATGGAAAAGGCAATGGAGTTTATGGCCAGAATGAAGGATGATGAGTGTGAGCCGAATGTTCAGATATATAATGTTGTCATTCGTTATTTTTGTGATGCAGAAGAAATTGAGAAGGGTTTGAATGTTTTTGAGAAGATGGGGGATGCAGATTGCTTGCCCAATTTGGATACATACAATATTTTGATTAGCGCAATGTTTGTGAGGAAGAAATCAGACTATTTGTTGACAGCAGGAAAGTTATTGATTGAGATGGTTGAGAGAGGATTTTGCAAAAGAAATTCTGAGATTGCAGAGCAGATGTGGCCGTCTTCCTCGTCGGCTCAAGCTGTGAAGCTGAGCAGCATTCAGATTGTGAAAGTTGAATCCACCAGATCCAGTTGGAAAATGACATTATCTTCTTCTACGATTCAAGAATCCGCATCTCACCATCGCACTTACAGTAGAAAGCAAAAATCTCTGGGTCTCTTATGTTCTAATTTCTTGAGCTTGTACAATCGGGATGGGGTGGAACCGATTGGGCTCGATGATGCCGCAAGCCGACTAGGAGTTGAGAGGCGTCGGATCTATGACATTGTCAATGTTCTTGAAAGCGTTGGCGTTCTTGCAAGAAAAGCAAAAAATCAGTATTCTTGGAAAGGGTTTGGGGCAATTCCTAAGGCCCTAGAAGAACTTAGGGAAGAAGGTTTAAGGGAGAATTTCCATACCTTTGACAGCAACAACTCTGCAAAAGTAGATGACGAAGATGAAAGATTTTCCAATCCTAACACTGGGAGCCAGCAAGACAAATCAAACCCTAGTTCTAAACTGAATCTAAATGTTTTCTTCACAGACAACAGAAGAGAAAAATCACTGGGACTTCTTACACAGAATTTTGTGAAGCTATTTCTCTGCTCTAACGTGGATTTGATTTCCCTTGAAGAAGCTGCAAGGATATTGCTTGGGGATGGCCAGAACTCCTCAATAATGAGAACAAAAGTTAGACGGTTATATGATATTGCAAATGTGCTGTCTTCCATGAATCTCATTGAAAAGACTAATCAGACGGAAAACAGGAAGCCTGCATTCAGGTGGTTGGGGATGAGAGGAAAATCAGAGAATGGATCTTTAAGTGTTTTGAATCTTAATGAGTCTAAGAAAAGGACATTTGGTACTGAAATTACAAACATCAGCTTTAAAAGGAACAAGATGGCTTCTTCAGTTGAGGGGAATTCAAACCAGAATACAAAGATGCAATGGCAAATGCAAGTAAAGCATGAGAATTTGGAAAATGGGATTGAAAGAAGTGATTTTGAGAAGGGTCCAAAGCAAAGTTCAAAAAGTTACCAGTTTGGTCCTTTTGCTCCAGTTAGTGTTCAAGACACTGTGAGACAGGTTCGTGATTGGGAAAGTCTTGCATCTACATATCGTCCTCAGTACCACAGCCAAGCATTAAGAGACCTCTTTGCTCATTACATGGAAGCTTGGAAAACATGGTACTCTGAAGTAGCTGGGAAGGAGCCAATACAGATTTCTTGA 2448 42.93 MLILANRLSSLRPTEPLLKPISYNYNLTTTTSPPSPPQDATIVNLVLKTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFCKRNSEIAEQMWPSSSSAQAVKLSSIQIVKVESTRSSWKMTLSSSTIQESASHHRTYSRKQKSLGLLCSNFLSLYNRDGVEPIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYSWKGFGAIPKALEELREEGLRENFHTFDSNNSAKVDDEDERFSNPNTGSQQDKSNPSSKLNLNVFFTDNRREKSLGLLTQNFVKLFLCSNVDLISLEEAARILLGDGQNSSIMRTKVRRLYDIANVLSSMNLIEKTNQTENRKPAFRWLGMRGKSENGSLSVLNLNESKKRTFGTEITNISFKRNKMASSVEGNSNQNTKMQWQMQVKHENLENGIERSDFEKGPKQSSKSYQFGPFAPVSVQDTVRQVRDWESLASTYRPQYHSQALRDLFAHYMEAWKTWYSEVAGKEPIQIS* 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8595970 8603212 + Vvi17g681 Vvi17g681 779378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g681 815 Pfam E2F/DP family winged-helix DNA-binding domain 592 670 IPR003316 GO:0005667|GO:0006355
Vvi17g681 815 Pfam E2F/DP family winged-helix DNA-binding domain 460 524 IPR003316 GO:0005667|GO:0006355
Vvi17g681 815 PANTHER OS02G0679200 PROTEIN 198 403 - -
Vvi17g681 815 PANTHER OS02G0679200 PROTEIN 23 199 - -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 138 170 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 197 226 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Vvi17g681 815 TIGRFAM PPR: pentatricopeptide repeat domain 298 331 IPR002885 -
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vvi17g681 815 MobiDBLite consensus disorder prediction 547 576 - -
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vvi17g681 815 Pfam Pentatricopeptide repeat domain 124 181 IPR002885 -
Vvi17g681 815 SUPERFAMILY Winged helix DNA-binding domain 458 522 IPR036390 -
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vvi17g681 815 Pfam PPR repeat family 198 236 IPR002885 -
Vvi17g681 815 Pfam PPR repeat family 329 376 IPR002885 -
Vvi17g681 815 Pfam PPR repeat family 259 308 IPR002885 -
Vvi17g681 815 SUPERFAMILY Winged helix DNA-binding domain 592 671 IPR036390 -
Vvi17g681 815 Gene3D - 586 672 IPR036388 -
Vvi17g681 815 Gene3D - 456 527 IPR036388 -
Vvi17g681 815 Gene3D Tetratricopeptide repeat domain 196 275 IPR011990 GO:0005515
Vvi17g681 815 Gene3D Tetratricopeptide repeat domain 68 195 IPR011990 GO:0005515
Vvi17g681 815 SMART E2F_TDP_2 590 670 IPR003316 GO:0005667|GO:0006355
Vvi17g681 815 SMART E2F_TDP_2 459 524 IPR003316 GO:0005667|GO:0006355
Vvi17g681 815 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 198 403 - -
Vvi17g681 815 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 23 199 - -
Vvi17g681 815 Gene3D Tetratricopeptide repeat domain 276 455 IPR011990 GO:0005515
Vvi17g681 815 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g681 - - - vvi:100263983 799.275
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1456 Vvi17g681 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi8g715 . 106 335 E2F-DP Transcription Factor Family AT5G02470 57.3 1.0e-68 257.3
Vvi8g523 . 85 288 E2F-DP Transcription Factor Family AT5G02470 55.1 5.1e-60 228.4
Vvi6g1278 ECH 14 444 E2F-DP Transcription Factor Family AT5G22220 54.9 8.3e-113 404.4
Vvi8g917 ECH 27 464 E2F-DP Transcription Factor Family AT5G22220 53.7 2.8e-108 389.4
Vvi8g917 ECH 10 467 E2F-DP Transcription Factor Family AT2G36010 58.0 7.0e-139 491.1
Vvi6g1278 ECH 3 447 E2F-DP Transcription Factor Family AT2G36010 53.0 3.3e-112 402.5
Vvi18g1096 . 114 391 E2F-DP Transcription Factor Family AT1G47870 55.7 2.9e-74 276.2
Vvi8g917 ECH 142 418 E2F-DP Transcription Factor Family AT1G47870 50.2 6.0e-64 241.9
Vvi14g1456 ECH 5 367 E2F-DP Transcription Factor Family AT3G01330 53.0 1.6e-92 336.7
Vvi17g681 ECH 457 806 E2F-DP Transcription Factor Family AT3G01330 52.5 4.4e-90 328.6
Vvi17g681 ECH 443 812 E2F-DP Transcription Factor Family AT3G48160 55.4 7.9e-104 374.4
Vvi14g1456 ECH 17 363 E2F-DP Transcription Factor Family AT3G48160 52.6 7.0e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14226 PF02319 E2F_TDP 4.30E-20 CL0123 Vvi TF