Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g683 ATGGAGACTAAAATACCATGTCGGCAGCTCTTCATCGACGGCAAATGGGTTGAACCCATCACGAAGAGGCGCATCCCCGTCATCAATCCCGCCACTGAGCAGACCATCGGCCTTATTCCGGCGGCCACTGGTGAAGATGTGGAGCTTGCTGTGGATGCTGCCCGAAGAGCCTTTGCCAGGAATAAGGGGGCAGATTGGGCTAAGGCGCCTGGTGCTGTTCGTGCTAAGTATTTGCGTGCCATTGCTGCCAAGATAACAGAGAGAAAGACTGAATTGGCCAAACTAGAGGCACTTGATTGTGGAAAACCCCTGGATGAAGCAGCATGGGATATTGATGACGTTGCTTCTTGTTTTGAGTACTTTGCAGACCACGCTGAAGCTTTAGATGCACAGCAAAAGGCTCCTTTGTCACTTCCTATGGAGACATTTAAGTGTCATATTCTTAAGGAGCCCGTTGGTGTTGTTGGATTGATTACACCATGGAATTACCCACTACTGATGGCTACATGGAAAGTGGCTCCTGCCCTAGCTGCTGGTTGCACAGCAATACTAAAGCCATCTGAGTTGGCTTCTGTGACTTGTTTAGAGCTGGCTGATGTGTGTATAGAGGTGGGTCTGCCACCTGGCGTCCTTAATATTCTGACTGGACTGGGCTCTGAAGCTGGTGCTCCATTGTCATCTCATCCCCATGTTGACAAGATTGCATTTACTGGAAGCACTGTTACTGGGAGCAAGATCATGACAGCTGCAGCTCAATTGGTGAAGCCTGTTTCATTGGAGCTTGGTGGAAAGAGTCCCATTCTTGTGTTTGAGGATGTCGACCTTGACAAGGCTGCTGAATGGACTGCCTTTGGTTGCTTTTGGACAAATGGCCAAATATGTAGTGCAACATCTCGTCTTCTTGTGCATGAAAGCATTGCAGCAGAATTTTTAGACAAGCTTGTGAAATGGACTAAAAATATCAAGATTTCAGATCCCTTTGAAGAAGGTTGTAGACTTGGTCCTGTTGTTAGTAGAGAGCAGTATGAGAAGATATTGAAGTTGGTTTCAACAGCTAAGAGTGAGGGTGCAACAATATTGTGTGGTGGGGGTCGTCCCCAGCATTTGAAGATGGGGTTCTACATTGAACCAACCATTATAAGTGATGTGACTACTTCCATGCAAATTTGGAGAGAGGAGGTTTTCGGGCCTGTCCTTTGTGTTAAAACATTTAGCTCCGAAGATGAAGCCATTGAACTAGCAAATGACACCCAGTATGGCTTAGCAGGTGCTGTAATTTCAAATGATCTGGAGAGGTGTGAACGTGTGTCAAAGGCCCTTAATGCAGGGATTGTATGGATCAACTGCTCACAGCCATGCTTCTGTCAAGCTCCATGGGGAGGAAACAAGCGTAGTGGTTTTGGGCGTGAACTAGGGCCACGGGGACTTGATAATTACTTAAGTGTGAAGCAGGTCACTCAGTACCTCTCCAATGAACCATGGGGCTGGTACCAGTCTCCTTCAAAGCTGTGA 1512 47.22 METKIPCRQLFIDGKWVEPITKRRIPVINPATEQTIGLIPAATGEDVELAVDAARRAFARNKGADWAKAPGAVRAKYLRAIAAKITERKTELAKLEALDCGKPLDEAAWDIDDVASCFEYFADHAEALDAQQKAPLSLPMETFKCHILKEPVGVVGLITPWNYPLLMATWKVAPALAAGCTAILKPSELASVTCLELADVCIEVGLPPGVLNILTGLGSEAGAPLSSHPHVDKIAFTGSTVTGSKIMTAAAQLVKPVSLELGGKSPILVFEDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHESIAAEFLDKLVKWTKNIKISDPFEEGCRLGPVVSREQYEKILKLVSTAKSEGATILCGGGRPQHLKMGFYIEPTIISDVTTSMQIWREEVFGPVLCVKTFSSEDEAIELANDTQYGLAGAVISNDLERCERVSKALNAGIVWINCSQPCFCQAPWGGNKRSGFGRELGPRGLDNYLSVKQVTQYLSNEPWGWYQSPSKL* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8614158 8620640 - Vvi17g683 Vvi17g683 779380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g683 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Vvi17g683 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 3 500 - -
Vvi17g683 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Vvi17g683 503 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Vvi17g683 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 3 500 - -
Vvi17g683 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Vvi17g683 503 CDD ALDH_F10_BADH 27 487 - -
Vvi17g683 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Vvi17g683 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g683 K00130 - vvi:100246770 1022.69