Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g684 ATGACAGCTGCAGCTCAATTGGTGAAGCCTGTTTCATTGGAGCTTGGTGGAAAGAGTTCCATTCTTGTGTTTGAGGATGTTGACCTTGACAAGGCTGCTGAATGGACTGCCTTTGGTTGCTTTTGGACAAATGGCCAAATATGTAGTGCAACTTCTCGTCTTCTTGTGCAAGAAAGCACTGCAGCAGAATTTTTAGACAAGCTTGTGAAATGGACCAAAAATATCAAGATTTCAGATCCCTTGGAAGAAGGTTGTAAACTTGGTCCTGTTGTCAGCAGAGGGCAGTATGAGAAGTTATCAGAGTTTATTTCAACAGCTACGAGTGAAGATGGAACAGTATTGTGTGGTGGGGGTTGTCCCCAGCATTTGAAGAGGGGTTTCTTCATTGAACCAACCATTATAAGTGATGTGACTACCTCCATGCAAATTTGGAGAGAGGAAGTTTTTGGACCTGTCCTATGTGTTAAAACACTTAGTACTGAAGATGAAGCCATTGAACTAGCAAATGACAGCTCTTATGCCTTAGCAGGTGCTGTAATTTCAGATGATCTGGAGAGGTGTGATCGTGTGTCAAAGGCCCTTAATGCAGGGATTGTATGGGTCAACTGCTCACAGCCATGCTTCTACCAAGCTCCATGGGGAGGCAATAAGCGTAGTGGTTTTGGGCGTGAACTAGGGCCATGGGGACTTGATAACTACTTAAATGTGAAGCAGGTCACTCAGTACATCTCCAGTGAACCATGGGGCTAG 750 44.53 MTAAAQLVKPVSLELGGKSSILVFEDVDLDKAAEWTAFGCFWTNGQICSATSRLLVQESTAAEFLDKLVKWTKNIKISDPLEEGCKLGPVVSRGQYEKLSEFISTATSEDGTVLCGGGCPQHLKRGFFIEPTIISDVTTSMQIWREEVFGPVLCVKTLSTEDEAIELANDSSYALAGAVISDDLERCDRVSKALNAGIVWVNCSQPCFYQAPWGGNKRSGFGRELGPWGLDNYLNVKQVTQYISSEPWG* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8621044 8629178 - Vvi17g684 Vvi17g684 779381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g684 249 Pfam Aldehyde dehydrogenase family 1 239 IPR015590 GO:0016491
Vvi17g684 249 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 237 IPR016162 GO:0016491
Vvi17g684 249 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 17 209 IPR016163 GO:0016620
Vvi17g684 249 SUPERFAMILY ALDH-like 1 242 IPR016161 GO:0016491
Vvi17g684 249 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 249 - -
Vvi17g684 249 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 249 - -
Vvi17g684 249 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 41 52 IPR016160 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g684 K00130 - vvi:100246770 454.136