Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g687 ATGGGAATCATGTCAGCCCATCAACCTAGTCATTCAGGTGATTATTCTGCATCTCAATTCTTTCATGTTCAATCAGAGCTAATCTCCCTCTCTTCCCAGCCAAGCTTACCATCAGTTCCTTCCCTCACCTCACAAACCCAACAGCAACAACTCTATCTTCCCAGCACCACCACCACCCACCATTGCGTCACCACTTTCAAAGGCCACACGTCCTACGTATCTTCCCTTGCCCTTGCTGGTAATTTCCTGTTTAGTGGATCTTCTGACAAAGAAATCCGATTGTGGGAGCAAAACTTGAACTCTGAACTTGATCATGAGAATATAATGGCAGTTTGGACTGTGACATCAAGGTGTGGCAGATTTTTATTCCTCTTCTTTAGAGGACTTCTTCATCCTCCTTTTGAGGTTTTGTATTATAGCGTGAGGAGATTGTGTTTTACCTTTTCCTTTTTCACTGCCTTGTGCTTTCAATTTCCTCCTCCCTCCTCTTCCTAA 495 43.84 MGIMSAHQPSHSGDYSASQFFHVQSELISLSSQPSLPSVPSLTSQTQQQQLYLPSTTTTHHCVTTFKGHTSYVSSLALAGNFLFSGSSDKEIRLWEQNLNSELDHENIMAVWTVTSRCGRFLFLFFRGLLHPPFEVLYYSVRRLCFTFSFFTALCFQFPPPSSS* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8671005 8672350 + Vvi17g687 Vvi17g687 779384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g687 164 SUPERFAMILY WD40 repeat-like 59 97 IPR036322 GO:0005515
Vvi17g687 164 SMART WD40_4 59 96 IPR001680 GO:0005515
Vvi17g687 164 Pfam WD domain, G-beta repeat 62 95 IPR001680 GO:0005515
Vvi17g687 164 Gene3D - 4 115 IPR015943 GO:0005515
Vvi17g687 164 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 66 96 - -
Vvi17g687 164 ProSiteProfiles Trp-Asp (WD) repeats profile. 66 96 IPR001680 GO:0005515
Vvi17g687 164 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 20 103 - -
Vvi17g687 164 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 103 IPR045182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g687 - - - vvi:100251957 166.007
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .