Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g690 ATGTCTCGGCCCCAGGTCACCATCACTCTGGGCCGTACTGGTCAGGTGGTGAAGAGGGCGGGAAACGTACCTGACGGCTCTCGATTTGATTCTTTGCCTTCAGCTGGAAGCAAGAGATCCACGAGGGATGGGGCTGGAGGTAATGCCGAGAGTTCCCTCTATGAGACGCAATCCAAGACTAAGCGACATCGGGGAGATAGAAGTGTTTGGAGTTCAAATGATGCTCGGGTTGGTCGAAATGATCTTCGTTTCAAACTCATGCAAAAAAACAAGTTTAGGCGAACAAGGGGTGACTATGAAGGAAGAAATCACACGGGCCTTAAGAGACAATTGCCAAGGGCCGTTTATCCTCCTGTCAATATGTATACACTGCAGCGCATGCCTGAATCAAAGGTTAATGGCCTTTTAAGACGAATTCCTCCCACAAGAAGTGCAGATGATTTGCTCCAGTTGAACTCATCAAGAAAATCATATTCCACGTGGACTCATAATGGGTTAAGATGTAGATCTCCAGACAGAATTTTGAGTGCTTCTAGAGGCTTCTCACCACCGGGAAATATAAACGACCAGCAGCAAGTACTGACATTTAGGCCAATTGATTCCTCAAGAGCTGCTGCATATATGGCCACAAAGCAGGTTTCACGACTTCCTCCACCAAATAGCATTGCTCAGAAAAATTCCTATTTGGGAGTGGAACCACTCACCGTTGCTAGCTTCTTACATTCACTGGGTTTGGGGAAATATATCATCCTTTTTCAGGCTGAGGAAATAGACATGACTGCACTAAAGCAAATGCGGGACAATGACCTGAAGGAGTTGGGAATACCAATGGGACCAAGGAAGAAGATCCTCCTTGCTCTCAGTCCTCATTCCAAACAAGTGTAG 885 46.44 MSRPQVTITLGRTGQVVKRAGNVPDGSRFDSLPSAGSKRSTRDGAGGNAESSLYETQSKTKRHRGDRSVWSSNDARVGRNDLRFKLMQKNKFRRTRGDYEGRNHTGLKRQLPRAVYPPVNMYTLQRMPESKVNGLLRRIPPTRSADDLLQLNSSRKSYSTWTHNGLRCRSPDRILSASRGFSPPGNINDQQQVLTFRPIDSSRAAAYMATKQVSRLPPPNSIAQKNSYLGVEPLTVASFLHSLGLGKYIILFQAEEIDMTALKQMRDNDLKELGIPMGPRKKILLALSPHSKQV* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8691793 8697959 - Vvi17g690 Vvi17g690 779387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g690 294 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 286 - -
Vvi17g690 294 PANTHER OSJNBA0060P14.15 PROTEIN 1 286 - -
Vvi17g690 294 Pfam SAM domain (Sterile alpha motif) 234 287 IPR001660 GO:0005515
Vvi17g690 294 MobiDBLite consensus disorder prediction 18 72 - -
Vvi17g690 294 Gene3D - 234 294 IPR013761 -
Vvi17g690 294 ProSiteProfiles SAM domain profile. 231 285 IPR001660 GO:0005515
Vvi17g690 294 SUPERFAMILY SAM/Pointed domain 232 288 IPR013761 -
Vvi17g690 294 SMART SAM_4 228 293 IPR001660 GO:0005515
Vvi17g690 294 MobiDBLite consensus disorder prediction 56 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g690 - - - vvi:100267308 587.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1417 Vvi17g690 ECH
Vvi1g789 Vvi17g690 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004993 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 5 3 41