Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g699 | ATGCGCTTTACCCCACTTCCCAAACTGTCCCTACTCTTCAGCACCAAAATCCCTCGACTCCAAGAACCTTTCTACGTTCAGTCTCCTCTGGTTTACATCTCATCAAACACCTCATCTGCCATCTGGGAACCATCCGGAACATCTTCATTTTCACTCCCAAGCCATTCAACATTCGTACAACTCCTGAAGAAGAGGCCATCTTTGACTCAGATCAAACAGATACATGCCCAAGTTGTTACTCACGGCTTGGCCCAGAATACCTCTCTCCTTGGACCTCTGATACACTCATATATTGGCTGTAGAAATCTCAGCTTTGCACGGATTGTGTTTGATCAATTCCCTTCTCTGCCGCCCACAATAATATGGAACCTCATGATCCAAGCCTATTCGAAGACACCCAGTTCACAAGAATCACTGTACCTCTTCCATCAAATGCTTGCGCATGGCAGGCCCACTTCAGCAGACAAGTACACCTTTACGTTTGTGTTTACAGCTTGCTCGCGTCATCCCACACTCCGTGGTTATGGTGAAAACGTTCATGGGATGGTTGTGAAAGATGGGTATGAATCGGATATATTTGTGGGGAATTCGTTGGTGAATATGTATTCAATCTTTTCAAGAATGGTTGATGCCAAGAGAGTGTTTGATGAAATGCCTCAAAGGGACGTAATCACTTGGACTAGCGTAGTAAAAGGGTATGCAATGCGTGGGGAGTTCTATAATGAAGCACTTCAATGTTTCAATGATATGCTTTGCCATGATGAGGTGAAGCCTAATGAGGCAGTATTAGTCAGCATCTTATCAGCATGTGCTCATCTTGGGGCCTTGGATCAAGGGAAATGGATTCATGTTTATATAGACAAGAATAGAATTCTGCTGAGTTCAAATATCTCGACTGCTCTTATTGATATGTATGCAAAATGTGGGAGGATAGATTGTGCAAGGCGGGTTTTTGATGGGTTACATAAAAGAGATCTCCTCACATGGACAAGTATGATATCAGGATTATCCATGCATGGGCTTGGTGCAGAATGTCTGTGGACTTTTTCAGAAATGCTAGCAGAAGGGTTTAAACCTGATGATATAACCCTTCTTGGTGTTTTAAATGGATGTAGTCATTCAGGTCTGGTTGAGGAGGAAATTGTTCATGGGATGGTAGTAAAAAGTGGGTTTGAATCAAATTTATATGTGGGCAACTCGGTGATTAATATGTGTTCTGTTTTTGCGAGAATGGAGGATGCCCGCAAAGTTTTCAATCAAATGTCTGAGCGGGATGTGTTTAGTTGGACTAGTCTGTTAGGTGGGTATGCAAAACATGGGGAGATGGATAGAGCCTCTCTTACATTTTTCTGCAACATGTTATGCGATGATAGGGTTAATCCTAATGAGGCTGTTCTGGTTTGTGTTCTATCTGCTTGTGCTCATCTTGGAGCCTTAGATCAGGGAAACTGGATTCATCTTTATATAGACAAGATTGGAATAAGGCAGAGCTCAAACATTTCTACTGCACTCATTGATATGTATGCAAAATGTGGAAGGATTGATTGTGCAAGTAGAGTTTTCAATGGAATTTGTAAACGTGATGTTCTCAGTTTTACAAGCATGATTTCAGGATTATCATATCATGGGCTTGGCAAGGATGCTTTGCGCGGTTCTTCAATCCTGGCTAATATGGAAAGCTTGTGGGGAATTGCACCCAAGATTGAGCACTACGGGTGTTACATTGATTTGCTTGGTCGTGCCGGCTATTTGGAGAGGGCACTTGAAGTTGTCAAAACCATGCCCATGGAACCAGACATTGTTATATGGAGGGCTTTGCTTAGTGCTAGTAGAATCCATCATAATGTTAATCTTGGGGAGCAGATTATCAGTCACATTGGGCAACTGAAATCTAGTGATCATAATGGAGGTGAGGTGCTTCTTTCAAATTTATATGCTTCTTTAGGAAGATGGGAGAGGGTCACAGAAATGAGGAAGCTAATGGTTGATAGGAGGAGTGAGTCAAGCCCTGGATGTAGTTGGATTGAGGTCAATGGTCTTGTTCATGAGTTTCGAGTTGCTGATCAGTTGCATCCCCAGATTGTAGAGATTCGAAACAAGCTGAATGAAATCTTGAAAAGACTAAGTCAAATAGGCTATTCGGCTAATACAATGCAAGTTTCATTTGATTTGAATGAGGAAGAGAAAGAGCAAGCAGTGGCTTGGCATAGTGAGAAGTTAGCTATTGCTTTTGGACTGATGAGTACTGAGCCAGGGACTTTGATTCGGATAGTGAAAAATCTAAGGACATGCGAAGACTGTCATTCAGCTCTGAAGACCATTTCCCAAGTTTATGGCAGGGAAATAGTAGTTAGAGATCGTTCTCGTTTCCACACTTTCATAGAAGGAGACTGTTCATGCAAGGATTTTTGGTAG | 2415 | 42.19 | MRFTPLPKLSLLFSTKIPRLQEPFYVQSPLVYISSNTSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW* | 805 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 8786987 | 8791406 | + | Vvi17g699 | Vvi17g699 | 779396 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g699 | 804 | Gene3D | Tetratricopeptide repeat domain | 485 | 691 | IPR011990 | GO:0005515 | |
| Vvi17g699 | 804 | Pfam | DYW family of nucleic acid deaminases | 712 | 804 | IPR032867 | GO:0008270 | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 328 | 357 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 299 | 324 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 531 | 549 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 224 | 251 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 121 | 149 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 427 | 446 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 571 | 595 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 502 | 527 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 399 | 425 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | PPR repeat | 196 | 222 | IPR002885 | - | |
| Vvi17g699 | 804 | Pfam | E motif | 613 | 676 | IPR046848 | - | |
| Vvi17g699 | 804 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 382 | 446 | - | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 418 | 550 | - | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 551 | 707 | - | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 220 | 380 | - | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 56 | 220 | - | - | |
| Vvi17g699 | 804 | Gene3D | Tetratricopeptide repeat domain | 382 | 483 | IPR011990 | GO:0005515 | |
| Vvi17g699 | 804 | Gene3D | Tetratricopeptide repeat domain | 284 | 381 | IPR011990 | GO:0005515 | |
| Vvi17g699 | 804 | Gene3D | Tetratricopeptide repeat domain | 178 | 283 | IPR011990 | GO:0005515 | |
| Vvi17g699 | 804 | Gene3D | Tetratricopeptide repeat domain | 49 | 177 | IPR011990 | GO:0005515 | |
| Vvi17g699 | 804 | TIGRFAM | PPR: pentatricopeptide repeat domain | 328 | 360 | IPR002885 | - | |
| Vvi17g699 | 804 | TIGRFAM | PPR: pentatricopeptide repeat domain | 224 | 259 | IPR002885 | - | |
| Vvi17g699 | 804 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 425 | 461 | IPR002885 | - | |
| Vvi17g699 | 804 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 222 | 258 | IPR002885 | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ELI1, CHLOROPLASTIC-LIKE | 418 | 550 | - | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ELI1, CHLOROPLASTIC-LIKE | 382 | 446 | - | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ELI1, CHLOROPLASTIC-LIKE | 551 | 707 | - | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ELI1, CHLOROPLASTIC-LIKE | 220 | 380 | - | - | |
| Vvi17g699 | 804 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ELI1, CHLOROPLASTIC-LIKE | 56 | 220 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g699 | - | - | - | vvi:100243334 | 802.357 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g699 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |