Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g7 ATGCGTGTGGCCTCCAAGCAAGCCTATATCTGCCGTGACTGCGGATATATTTACAACGACAGAACTCCATTTGAGAAACTACCTGATGGATACTTCTGTCCAGTTTGTGGTGCTCCAAAGCGAAGATTTAGGCCATATCAGCCTGCTGTGGCAAAAAATGCTAATGACATGGATGTTCGGAAGGCACGGAAAACACAGATCCAGAAAGATGAAGCAATTGGGCGAGCATTACCTATTGCTATTGTGGTTGGAATTGCAGCACTTGCTGGTTTATACTTTTACCTCAACAGCACTGTCTAG 300 45.0 MRVASKQAYICRDCGYIYNDRTPFEKLPDGYFCPVCGAPKRRFRPYQPAVAKNANDMDVRKARKTQIQKDEAIGRALPIAIVVGIAALAGLYFYLNSTV* 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 44410 46742 - Vvi17g7 Vvi17g7 778704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g7 99 CDD rubredoxin 9 46 IPR024935 GO:0005506
Vvi17g7 99 SUPERFAMILY Rubredoxin-like 6 51 - -
Vvi17g7 99 Pfam Rubredoxin 9 43 IPR024935 GO:0005506
Vvi17g7 99 PANTHER RUBREDOXIN-LIKE SUPERFAMILY PROTEIN 1 98 - -
Vvi17g7 99 Gene3D - 6 46 - -
Vvi17g7 99 ProSiteProfiles Rubredoxin-like domain profile. 6 46 IPR024934 GO:0005506
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g7 - - - vvi:100259528 196.438
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g7 . . . Bda15g00701 Bpe12g00454 . . . . . . . . . . . . . . . . . . . Cla06g01790 Cam06g1989 Cec06g2039 Cco06g2049 Clacu06g1946 Cmu06g1886 Cre06g2697 . . Cone13ag0270 Cone19ag0254 . . . . . . . . . . . Bma08g00284 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01689 . Chy02g02709 Cme02g02119
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009535 1 2 1 1 1 1 1 0 0 1 1 1 2 1 1 2 1 2 0 1 1 0 1 1 1 1 1 1 3 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14228 PF00301 Rubredoxin 1.20E-05 CL0045 Vvi TF