Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g70 ATGGCGACTGAAACCCTAGCGGATACGAAGGTAGAGGATGGGCTGGGGGGCAAGGAAGAGGTGAGAGAAGAGAGGGAGCAGAGTGAGGCGGAGGAGAAGAAGGAGAAGGAAGGCGAGGATTTTCCGGAGAAATCTGTTTCTCGGGAGAACGAGGAAAACGAAGGAAAGGAAGAGGAAGGTGATGTGAAGGAAGACGAGAGTAAGGAGGAAAAGGTTGAGAGCAAGAAAGGGAAACGAAGTAGGAAGCAGGGCTCAAAGAGAGGCCAGCGCGAGGGGAAGAAATCGGGGCAAGAATCGGCGGCCAAGAAAGCGAAGGCTTCGAGTCGTAAAGAACCTGTTACGCCAAATGAGAGGCCTACAAGGGAGAGGAAAACGGTTGAACGGTACTCGGAACCGTTACCGGGACGAGCCTCTGCGAGCAAGGGATTGTCAATTGAGAAGGGCACTGGCACACAGCTTAAGGATATCCCCAATGTGGCTTTCAAGCTGTCAAAGAAAAAACCTGATGAAAACTTGCAGACACTTCACACAATTCTTTTTGGGAAGAAAGCCAAGATACATACTTTGAAAAGGAATATAGGCCAATTTTCTGGCTATGTATGGGTTGAGAATGAGGAGGAAAAGCAGAAGGCAAAAGTAAAGGAGAAACTTGACAAATGCATTAAAGAAAAATTAGTGGATTTCTGTGATGTGCTGAATATTCCAATAAACAAAGCCATTGTTAGAAAGGAAGAACTCTCTGCAAAGTTACTGGAATTTTTGGAATCCCCACATGCTACAACTGATGTTTTGCTTGCTGATAAGGAACAGAAGGGAAAAATTCGCAAGAGGAAGGTAACACCAAGCAAAAGCACTAGTCCTGGAGAGACGTCTATGGAAAAGCCAGCCAAGAAACGAAAACAAACTTCAGTTGGGGATAAGCAAAGGCCTTCATCTGAAGTGGAGGGAGAAGATGAAGTTGAAGCTTCAGCGAGCAGAGATGATTCAGATGAAGTGGAGGACAATGATACAGCTATGAAAGAACAGAGTGATCAAGAGGAGACTAAATCTGAGGAAGAGGAAGAGGAGAAGAAGGAACAGAAAACAACTAAAAAAGCTTCATCTAGAAAGAGTGTAAAGGAGGATTCAGGGGCTAAACACAGGGGCAAGAAGGCCTCTGCTTCAAGATCTGTGAAAAGCCCTGCAAAATTGACAAAAAAATCTTCTAGTTCAACTTCCAAAAAAGCTGATGCTGATGATACTTCTGTTGCTCCTAAATCCAAGGAATCTTCAGCTAAAAAGAGAAAGGCTGAAAAGGAAAGCCAGAAGGATCAAAGTGATCCTGCCAAGGAAAAAACTGCTAGTAAAAAACGATCAAGCAGGGCGACAGAAAAGGTTTCATCAAAGGATCTAGGAAAAGGCAAAACTAGCAAGAAGGCAAAGCCAGAACCCAGCAGAGAAGAAATGCATGCAGTAGTAGTAGATATTCTGAAGCAAGTAGACTTTAATACTGCAACTTTATCAGATATTCTCAGGCAACTTGGTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTATAATTACAGATGTATGTAGTGGACTTACTCTGGTAGATCTCCTATGTACAGAGGTTTCAGCAGCAGTTCCCATAGACCGTAGAGTAGAGTTGCAATTTGGATATCTTTACCTTTCAGGGACAAAACCTCCCAGCAAGGATTTATTTGTACCATATACATCTTGCTATCGACTCCTTTTGCCTTTCCTCATTGACTTTATGAGTTTCCAGCTGCCCAGGATATCTTTTTTGAATCAGGAAGTTGAAAATGTTGCTTGGATTTTAAAAGCTTTTTCGAAAAAATGGATTTTGCAATTTCAGAGTCTGCTGAAGACCATGCCCAAAATCAGACTCAAAAAAGAAGAAAAAAAACAACATTTTTTTCTCTTACTAACCCCATTTGTCTCTGATTCAATCTTCCCACTCTGCAGGTTTTTTTTGTTCTCTGATCTTGGAGACTGCATTCTAATGGCAAAGGCTAGCAGCAATGGTGTGTTTGAACTTAGTGTTAAGCAAGAGGAACCAACCTTGGTTCCTCCGGCAGAGGACACAGAGAAGGGTCTCTACTTCCTCTCCAACCTCGACCAGAACATTGCAGTGATTGTTCGAACTATTTACTGCTTTAAATCTGAGGCCAAAGGCAATGAGAGAGCTGCAGAAATCATCAAGGATGCCTTATCAAAGGTTCTTGTTCACTACTACCCCCTTGCTGGGAGGCTAACGATCAGCTCAGAGGGTAAACTGATTGTGGATTGTACCGGGGAAGGTGCTGTTTTTGTCGAGGCTGAAGCTAATTGTGCTGTAGAAGAGATCGGCGACATAACAAAACCCGACCCCGTGACTCTTGGGAAGCTTGTTTATGATATTCCTGGTGCTAGGAACATACTGGAGACACCTCCTCTTGTTGCTCAGGTGACTAAGTTCAAGTGTGGAGGATTTGTTCTTGGGCTATGTATGAATCACTGTATATTTGATGGGCTTGGTGCCATGGAATTTGTGAACTCATGGGGGGAAACTGCCAGAGGCTTGCCCCTGAAGGTGCCTCCATTCCTGGACAGGAGCATACTCAGAGCTAGAAACCCACCCAAGATAGAGTTCCCCCATCATGAATTCGCTGAAATTGAGGATGTATCAAACACCATGAAGCTTTATGAGGAGGAAATGCTCTACAGATCCTTCTGTTTCGACCCTGAAAAGCTTGATCAACTCAAGATGATAGCCATGGAAGACGGGATCACAAGAGCCAGGCCTTCTCTTGCTGCGACACTCCTCGTTACTACTTGGTCTAGGCTGTCTTTCCATACCACAGACTTCGGATGGGGGGAGCCCATTTTGTCAGGGCCGGTGGCCTTGCCGGAGAAGGAAGTGATTCTGTTCTTATCTCATGGAAAAGAAAGGAAAAGCATAAATGTGCTTCTGGGTTTGCCAGCTTCAGCTATGAAGGTGTTTGAAGAACTGATGCAGTTCTAG 3021 44.26 MATETLADTKVEDGLGGKEEVREEREQSEAEEKKEKEGEDFPEKSVSRENEENEGKEEEGDVKEDESKEEKVESKKGKRSRKQGSKRGQREGKKSGQESAAKKAKASSRKEPVTPNERPTRERKTVERYSEPLPGRASASKGLSIEKGTGTQLKDIPNVAFKLSKKKPDENLQTLHTILFGKKAKIHTLKRNIGQFSGYVWVENEEEKQKAKVKEKLDKCIKEKLVDFCDVLNIPINKAIVRKEELSAKLLEFLESPHATTDVLLADKEQKGKIRKRKVTPSKSTSPGETSMEKPAKKRKQTSVGDKQRPSSEVEGEDEVEASASRDDSDEVEDNDTAMKEQSDQEETKSEEEEEEKKEQKTTKKASSRKSVKEDSGAKHRGKKASASRSVKSPAKLTKKSSSSTSKKADADDTSVAPKSKESSAKKRKAEKESQKDQSDPAKEKTASKKRSSRATEKVSSKDLGKGKTSKKAKPEPSREEMHAVVVDILKQVDFNTATLSDILRQLGTHFDLDLMHRKTEVKAIITDVCSGLTLVDLLCTEVSAAVPIDRRVELQFGYLYLSGTKPPSKDLFVPYTSCYRLLLPFLIDFMSFQLPRISFLNQEVENVAWILKAFSKKWILQFQSLLKTMPKIRLKKEEKKQHFFLLLTPFVSDSIFPLCRFFLFSDLGDCILMAKASSNGVFELSVKQEEPTLVPPAEDTEKGLYFLSNLDQNIAVIVRTIYCFKSEAKGNERAAEIIKDALSKVLVHYYPLAGRLTISSEGKLIVDCTGEGAVFVEAEANCAVEEIGDITKPDPVTLGKLVYDIPGARNILETPPLVAQVTKFKCGGFVLGLCMNHCIFDGLGAMEFVNSWGETARGLPLKVPPFLDRSILRARNPPKIEFPHHEFAEIEDVSNTMKLYEEEMLYRSFCFDPEKLDQLKMIAMEDGITRARPSLAATLLVTTWSRLSFHTTDFGWGEPILSGPVALPEKEVILFLSHGKERKSINVLLGLPASAMKVFEELMQF* 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 696454 707562 - Vvi17g70 Vvi17g70 778767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g70 1006 Coils Coil 335 370 - -
Vvi17g70 1006 MobiDBLite consensus disorder prediction 89 130 - -
Vvi17g70 1006 MobiDBLite consensus disorder prediction 1 148 - -
Vvi17g70 1006 MobiDBLite consensus disorder prediction 403 481 - -
Vvi17g70 1006 MobiDBLite consensus disorder prediction 264 481 - -
Vvi17g70 1006 Pfam Transferase family 686 921 - -
Vvi17g70 1006 Pfam Transferase family 925 1004 - -
Vvi17g70 1006 PANTHER DEK PROTEIN 29 532 IPR044198 GO:0003677|GO:0006325
Vvi17g70 1006 MobiDBLite consensus disorder prediction 354 382 - -
Vvi17g70 1006 Coils Coil 203 223 - -
Vvi17g70 1006 Coils Coil 48 68 - -
Vvi17g70 1006 MobiDBLite consensus disorder prediction 317 335 - -
Vvi17g70 1006 Gene3D - 681 890 IPR023213 -
Vvi17g70 1006 SUPERFAMILY DEK C-terminal domain 470 531 - -
Vvi17g70 1006 Gene3D - 469 531 - -
Vvi17g70 1006 PANTHER OS01G0924900 PROTEIN 29 532 - -
Vvi17g70 1006 MobiDBLite consensus disorder prediction 292 316 - -
Vvi17g70 1006 MobiDBLite consensus disorder prediction 61 77 - -
Vvi17g70 1006 MobiDBLite consensus disorder prediction 11 53 - -
Vvi17g70 1006 Pfam DEK C terminal domain 477 528 IPR014876 -
Vvi17g70 1006 Gene3D - 928 1005 IPR023213 -
Vvi17g70 1006 Coils Coil 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g70 K17046 DEK; protein DEK K15400 vvi:100245819 806.594
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g70 . . Bda06g00718 Bda15g00682 Bpe12g00471 . . Bma12g01088 . . Cma10g00046 Cma11g00021 Car10g00035 Car11g00020 Sed12g2525 . Cpe04g01627 Bhi02g00660 Tan09g2398 Cmetu02g1444 . Hepe09g0033 . . Cla06g01759 Cam06g1951 Cec06g2000 Cco06g2006 Clacu06g1908 Cmu06g1848 Cre06g2662 . . Cone13ag0236 Cone19ag0222 . . . . . Blo15g00199 . . Bpe07g00898 . . Bma08g00267 . Cmo10g00041 Cmo11g00021 . . . . . Cpe18g00919 . . . . . . . . . . . . . . Lsi06g01657 Csa01g00038 Chy02g02681 Cme02g02085
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009134 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34