Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g704 ATGCATGGGCGGGAAGGTGAGGACAGGAAACGGAGTCGGCACATGTGGTCGGTCCCTACTCGTGGCACCGCGTCTGTAGCTGATGATTCTTCGACATCTACAGCTAATTCTTTCTTAAAGGATGGTCGCAACATTAGTGTTGGTGACTGTGCTCTTTTCAAACCGTCCCAGGATTCCCCACCTTTCATTGGAATAATCCGTTGGTTAACATCAAGTAAGAATAATATAAGGTTAGGTGTGAATTGGCTTTATCGACCTTCTGAAGTAAAGCTTGGCAAAGGCATCCTGCTGGAAGCTGCGCCAAACGAAGTTTTCTATACCTTTCATAAGGATGAGATTCCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTCCTTCCTAAAGGTGATGAACTTCCTTCGGGAATATCCTCGTTTGTGTGCAGGCGGGTTTTTGACGTTGCAAACAAGTGTTTATGGTGGTTAACTGATCAAGATTATATTAATGAGCGACAGGAAGAAGTAGATAAGTTATTATATAAAACGCGAATAGAAATGCATGCAACAGTGCAGCCAGGTGGTCGTTCTCCAAAACCAATGAGTGGTCCAACATCAACATCGCAAATAAAACCTGGTTCTGATAGTAGTACTCAAAACTGTGCCACTTCCTTGCCTTCCCAAGTTAAGGGAAAGAAAAGGGAGCGAGGAGATCAGGGCTCTGAGCCCATTAAACGTGAGCGCCCTTCAAAAACTGATGATGGGGATTCTGGTCACTCTAGACCAGAGAGCGTTTGGAAATCTGAGATTGCTAAAATTACAGAAAGGGGAGGGCTTGTTGATTCAGAAGGGGTTGAGAGACTTGTGCAACTCATGCAGCCTGAGAGAGCTGAGAAGAAAATAGACTTGATTGGCCGTTCAATTCTTGCAGGTGTTATAGCTGCCACAGAGAAGTATGATTGCCTTGGTCGATTTGTCCAGCTCAGGGGCTTGCCTGTATTGGATGAATGGCTCCAAGAGGCACATAAAGGAAAGATTGGTGATGGTAGTAGCCCCAAGGACAGTGATAAATCTGTTGAGGAATTCCTATTGGTTTTACTTCGTGCACTCGATAAGCTGCCTGTGAATCTTCAAGCCCTTCAAATGTGTAACATTGGCAAATCTGTTAATCATTTACGTAGTCATAAAAACTTAGAAATTCAGAAAAAAGCAAGGAGTTTAGTTGATACATGGAAGAAACGTGTTGAGGCAGAAATGAATATTAATGATGCGAAGTCTGGTTCAAGTCAGGCTGTTGCATGGTCTTCGAGGCCACGTCTTTCTGAAGTTTCTCATGGTGGGAACAGACACTCTGGAGGCTCCTCTGAGATTGCCATGAAGAGCTCAGTCACACAGCTTTCTTCATCTAAAACAGCTCCAGTTAAGCTTGTACAGGGGGAAATTGCCAAGTCTGGGTCTGCATCCCAGGGATTTACAAAATCAGCAACATCACCTGCATCAGTGAGTACTAGCTTAAAGGATGGTCAAACCCGCGTTGCTGGTGCTGGTAATGCCTCTGATCCTCCTCTAACGACAGTAAGGGATGAGAAAAGCAGCAGTTCTAGTCAATCTCATAACAATAGTCAGTCTTGTTCGATCAATGGCTATCCAGGGCCTGCTGTGTCTGGAGTGCAAAGGGAAACCGGTTCAAGTAGAAGTTCTTCCTTTCAAAGAAATCCTGCCTCAGAAAAAGTATCACAGTCTGGATTGACATGCGATAAGGCTTTTGATTCATGGCAAAGCAATGATTTCAAAGATGCAATGACTGGGTCTGATGAAGGTGATGGATCACCTGCTACTCTTCCTGATGAAGAGCGCTCCAGGACTGGTGATGACACTAGGAAAATCAAAACTGCCTCGTCATCATCAGGAATTGAACCCAAGTCAGGGAAATTGGTTGAGGCTTCTTTCACCTCCATGAATGCTTTAATTGAAAGTTGTGTCAAGTGTGAGGCTAATGCATCTGTTTCAGTTGTTGATGATGTCGGAATGAATCTGCTTGCTAGTGTGGCTGCCGGAGAAATGGCCAAACGAGAGTCAGTTTCACCTGCTGATTCTCCACTAAGAAATACTGCTGTTATTGAAGATTCTTCTGCAGGCAATGATGCGAAATCAAAACCAACAGGAGATGACATCTTGAGAGAACAAAGTCAGTCTAACTACGGTCCCACCGGTGATACTGAGAAGCAGGGTTTTTGGGCTAAGGATGGATTGCATCATTTACCTAAACATGCATTGACTAACAGAGAGAACAATGAACATATTAATTCTACCAGTATTGATTTAGTAAGAACTTCAGAGCTGTGTTCAGAAATCAACAGAAAATCAGATGAAACAGTGGTTGGTGCTTCTGTGACTGCATCCCCTGTGAGCACAACAGAAAAAGGCAGTGATGATGAACAAGGGAAACAACTTCATGAGAAGAAGGCAGCTGTTGATGGAGTAAATGTTGATGGTATTCCAGATACTAAACCAAAGGTGAGCAGTTCTTCATTGGCTGAAGATAAAGTCAATGATGTCCTTCCCTGTGTAGAATTGAAGGAAGAACAGTCATCATATGCATCATTAGAACCTGATGGTGAAAAGAATAATGTTAATGAAGATTTGGTCCCAGAAAATGTTGATCAAATGAAGGCTGAAAAGGCTGATGAAATTTGTGTCTCAAATCATGCTAATCAGATGGAAGAACAGAGAATTGAGCCAAAAAATCATGCTTCAACTGCTGCTGAGGATCGAGTTGTGGCTGGTTTAAGTGGAACAGCTTGTAAGGCCTAG 2793 43.36 MHGREGEDRKRSRHMWSVPTRGTASVADDSSTSTANSFLKDGRNISVGDCALFKPSQDSPPFIGIIRWLTSSKNNIRLGVNWLYRPSEVKLGKGILLEAAPNEVFYTFHKDEIPAASLLHPCKVAFLPKGDELPSGISSFVCRRVFDVANKCLWWLTDQDYINERQEEVDKLLYKTRIEMHATVQPGGRSPKPMSGPTSTSQIKPGSDSSTQNCATSLPSQVKGKKRERGDQGSEPIKRERPSKTDDGDSGHSRPESVWKSEIAKITERGGLVDSEGVERLVQLMQPERAEKKIDLIGRSILAGVIAATEKYDCLGRFVQLRGLPVLDEWLQEAHKGKIGDGSSPKDSDKSVEEFLLVLLRALDKLPVNLQALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSSQAVAWSSRPRLSEVSHGGNRHSGGSSEIAMKSSVTQLSSSKTAPVKLVQGEIAKSGSASQGFTKSATSPASVSTSLKDGQTRVAGAGNASDPPLTTVRDEKSSSSSQSHNNSQSCSINGYPGPAVSGVQRETGSSRSSSFQRNPASEKVSQSGLTCDKAFDSWQSNDFKDAMTGSDEGDGSPATLPDEERSRTGDDTRKIKTASSSSGIEPKSGKLVEASFTSMNALIESCVKCEANASVSVVDDVGMNLLASVAAGEMAKRESVSPADSPLRNTAVIEDSSAGNDAKSKPTGDDILREQSQSNYGPTGDTEKQGFWAKDGLHHLPKHALTNRENNEHINSTSIDLVRTSELCSEINRKSDETVVGASVTASPVSTTEKGSDDEQGKQLHEKKAAVDGVNVDGIPDTKPKVSSSSLAEDKVNDVLPCVELKEEQSSYASLEPDGEKNNVNEDLVPENVDQMKAEKADEICVSNHANQMEEQRIEPKNHASTAAEDRVVAGLSGTACKA* 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8832451 8841207 + Vvi17g704 Vvi17g704 779401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g704 930 SMART BAH_4 43 157 IPR001025 GO:0003682
Vvi17g704 930 MobiDBLite consensus disorder prediction 550 575 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 476 575 - -
Vvi17g704 930 Pfam BAH domain 45 149 IPR001025 GO:0003682
Vvi17g704 930 MobiDBLite consensus disorder prediction 1 33 - -
Vvi17g704 930 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 313 422 IPR035441 -
Vvi17g704 930 MobiDBLite consensus disorder prediction 605 621 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 416 464 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 718 732 - -
Vvi17g704 930 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 583 906 - -
Vvi17g704 930 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 538 - -
Vvi17g704 930 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 537 583 - -
Vvi17g704 930 Gene3D - 30 262 IPR043151 -
Vvi17g704 930 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 538 - -
Vvi17g704 930 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 583 906 - -
Vvi17g704 930 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 537 583 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 440 464 - -
Vvi17g704 930 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 276 412 IPR035441 -
Vvi17g704 930 MobiDBLite consensus disorder prediction 416 430 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 192 220 - -
Vvi17g704 930 SMART TFS2_5 331 410 IPR003617 GO:0005634
Vvi17g704 930 MobiDBLite consensus disorder prediction 517 542 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 476 503 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 222 261 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 690 710 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 786 801 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 588 634 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 1 15 - -
Vvi17g704 930 Pfam TFIIS helical bundle-like domain 359 408 IPR017923 -
Vvi17g704 930 MobiDBLite consensus disorder prediction 786 811 - -
Vvi17g704 930 CDD TFIIS_I 333 409 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 680 737 - -
Vvi17g704 930 ProSiteProfiles TFIIS N-terminal domain profile. 325 411 IPR017923 -
Vvi17g704 930 MobiDBLite consensus disorder prediction 182 261 - -
Vvi17g704 930 MobiDBLite consensus disorder prediction 900 930 - -
Vvi17g704 930 ProSiteProfiles BAH domain profile. 43 157 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g704 - - - vvi:100248456 1108.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi14g1400 Vvi17g704 ECH
Vvi1g754 Vvi17g704 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14229 PF01426 BAH 1.40E-10 No_clan Vvi TR